A structural informatics study on collagen

被引:5
作者
Bolboacaa, Sorana D. [1 ]
Jaentschi, Lorentz [2 ]
机构
[1] Iuliu Hatieganu Univ Med & Pharm Cluj Napoca, Dept Med Informat & Biostat, Cluj Napoca, Romania
[2] Tech Univ Cluj Napoca, Cluj Napoca 400641, Romania
关键词
amino acids; structure-activity relationships; type I collagen;
D O I
10.1111/j.1747-0285.2007.00619.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The study integrates knowledge resulting from structure-activity relationships analysis of amino acids with respect to the characterization of alpha 1 and alpha 2 type I collagen chains. Specifically, 15 amino acids and 14 properties were investigated and their structure-activity relationship models were obtained. The models were integrated into a web application and were used to predict the properties of a set of six amino acids. The similarities in alpha 1 and alpha 2 type I collagen chains has been investigated starting from the observed and predicted properties of amino acids by using two-step cluster analysis.
引用
收藏
页码:173 / 179
页数:7
相关论文
共 26 条
[2]   Methionine inhibits cellular growth dependent on the p53 status of cells [J].
Benavides, Maximo A. ;
Oelschlager, Denise K. ;
Zhang, Huang-Ge ;
Stockard, Cecil R. ;
Vital-Reyes, Victor S. ;
Katkoori, Venkat R. ;
Marine, Upender ;
Wang, Wenquan ;
Bland, Kirby I. ;
Grizzle, William E. .
AMERICAN JOURNAL OF SURGERY, 2007, 193 (02) :274-283
[3]   How good can the characteristic polynomial be for correlations? [J].
Bolboaca, Sorana Daniela ;
Jantschi, Lorentz .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2007, 8 (04) :335-345
[4]  
BUMBLE S, 1999, COMPUTER GEN PHYS PR
[5]   Mutations near amino end of α1(I) collagen cause combined osteogenesis imperfecta/Ehlers-Danlos syndrome by interference with N-propeptide processing [J].
Cabral, WA ;
Makareeva, E ;
Colige, A ;
Letocha, AD ;
Ty, JM ;
Yeowell, HN ;
Pals, G ;
Leikin, S ;
Marini, JC .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (19) :19259-19269
[6]   Amino acid similarity matrices based on force fields [J].
Dosztányi, Z ;
Torda, AE .
BIOINFORMATICS, 2001, 17 (08) :686-699
[7]   Comparative study of prostate specific antigen (PSA), C-terminal propeptide of blood type I procollagen (PICP) and urine type I collagen-crosslinked N telopeptide (NTx) levels using bone scintigraphy in prostate cancer patients [J].
Fukumitsu, N ;
Uchiyama, M ;
Mori, Y ;
Kishimoto, K ;
Nakada, J .
ANNALS OF NUCLEAR MEDICINE, 2003, 17 (04) :297-303
[8]   A novel COL1A1 mutation in infantile cortical hyperostosis (Caffey disease) expands the spectrum of collagen-related disorders [J].
Gensure, RC ;
Mäkitie, O ;
Barclay, C ;
Chan, C ;
DePalma, SR ;
Bastepe, M ;
Abuzahra, H ;
Couper, R ;
Mundlos, S ;
Sillence, D ;
Kokko, LA ;
Seidman, JG ;
Cole, WG ;
Jüppner, H .
JOURNAL OF CLINICAL INVESTIGATION, 2005, 115 (05) :1250-1257
[9]   AMINO-ACID DIFFERENCE FORMULA TO HELP EXPLAIN PROTEIN EVOLUTION [J].
GRANTHAM, R .
SCIENCE, 1974, 185 (4154) :862-864
[10]   Recognition of transmembrane helices by the endoplasmic reticulum translocon [J].
Hessa, T ;
Kim, H ;
Bihlmaier, K ;
Lundin, C ;
Boekel, J ;
Andersson, H ;
Nilsson, I ;
White, SH ;
von Heijne, G .
NATURE, 2005, 433 (7024) :377-381