A structural informatics study on collagen

被引:5
作者
Bolboacaa, Sorana D. [1 ]
Jaentschi, Lorentz [2 ]
机构
[1] Iuliu Hatieganu Univ Med & Pharm Cluj Napoca, Dept Med Informat & Biostat, Cluj Napoca, Romania
[2] Tech Univ Cluj Napoca, Cluj Napoca 400641, Romania
关键词
amino acids; structure-activity relationships; type I collagen;
D O I
10.1111/j.1747-0285.2007.00619.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The study integrates knowledge resulting from structure-activity relationships analysis of amino acids with respect to the characterization of alpha 1 and alpha 2 type I collagen chains. Specifically, 15 amino acids and 14 properties were investigated and their structure-activity relationship models were obtained. The models were integrated into a web application and were used to predict the properties of a set of six amino acids. The similarities in alpha 1 and alpha 2 type I collagen chains has been investigated starting from the observed and predicted properties of amino acids by using two-step cluster analysis.
引用
收藏
页码:173 / 179
页数:7
相关论文
共 26 条
[11]   QUASI-HEXAGONAL MOLECULAR PACKING IN COLLAGEN FIBRILS [J].
HULMES, DJS ;
MILLER, A .
NATURE, 1979, 282 (5741) :878-880
[12]   WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families [J].
Ivanisenko, VA ;
Eroshkin, AM ;
Kolchanov, NA .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W99-W104
[13]   Results from the use of molecular descriptors family on structure property/activity relationships [J].
Jaentschi, Lorentz ;
Bolboaca, Sorana-Daniela .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2007, 8 (03) :189-203
[14]  
J├a┬nntschi L., 2005, LEONARDO ELECT J PRA, V6, P76
[15]  
Kadler KE, 1996, BIOCHEM J, V316, P1
[16]  
Koyack Marc J., 2006, V340, P95
[17]   A SIMPLE METHOD FOR DISPLAYING THE HYDROPATHIC CHARACTER OF A PROTEIN [J].
KYTE, J ;
DOOLITTLE, RF .
JOURNAL OF MOLECULAR BIOLOGY, 1982, 157 (01) :105-132
[18]   A simple, yet highly accurate, QSAR model captures the complement inhibitory activity of compstatin [J].
Mulakala, Chandrika ;
Lambris, John D. ;
Kaznessis, Yiannis .
BIOORGANIC & MEDICINAL CHEMISTRY, 2007, 15 (04) :1638-1644
[19]   CLUSTER-ANALYSIS OF AMINO-ACID INDEXES FOR PREDICTION OF PROTEIN-STRUCTURE AND FUNCTION [J].
NAKAI, K ;
KIDERA, A ;
KANEHISA, M .
PROTEIN ENGINEERING, 1988, 2 (02) :93-100
[20]   Microfibrillar structure of type I collagen in situ [J].
Orgel, Joseph P. R. O. ;
Irving, Thomas C. ;
Miller, Andrew ;
Wess, Tim J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (24) :9001-9005