Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B-cereus-group plasmids, including Bacillus anthracis pXO1

被引:113
作者
Rasko, David A.
Rosovitz, M. J.
Okstad, Ole Andreas
Fouts, Derrick E.
Jiang, Lingxia
Cer, Regina Z.
Kolsto, Anne-Brit
Gill, Steven R.
Ravel, Jacques
机构
[1] Inst Genom Res, Rockville, MD 20850 USA
[2] Univ Oslo, Biotechnol Ctr Oslo, N-0316 Oslo, Norway
[3] Univ Oslo, Dept Pharmaceut Biosci, N-0316 Oslo, Norway
关键词
D O I
10.1128/JB.01313-06
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The plasmids of the members of the Bacillus cereus sensu lato group of organisms are essential in defining the phenotypic traits associated with pathogenesis and ecology. For example, Bacillus anthracis contains two plasmids, pX01 and pX02, encoding toxin production and encapsulation, respectively, that define this species pathogenic potential, whereas the presence of a Bt toxin-encoding plasmid defines Bacillus thuringiensis isolates. In this study the plasmids from B. cereus isolates that produce emetic toxin or are linked to periodontal disease were sequenced and analyzed. Two periodontal isolates examined contained almost identical similar to 272-kb plasmids, named pPER272. The emetic toxin-producing isolate contained one similar to 270-kb plasmid, named pCER270, encoding the cerculide biosynthesis gene cluster. Comparative sequence analyses of these B. cereus plasmids revealed a high degree of sequence similarity to the B. anthracis pX01 plasmid, especially in a putative replication region. These plasmids form a newly defined group of pXO1-like plasmids. However, these novel plasmids do not contain the pX01 pathogenicity island, which in each instance is replaced by plasmid specific DNA. Plasmids pCER270 and pPER272 share regions that are not found in any other pXO1-like plasmids. Evolutionary studies suggest that these plasmids are more closely related to each other than to other identified B. cereus plasmids. Screening of a population of B. cereus group isolates revealed that pXO1-like plasmids are more often found in association with clinical isolates. This study demonstrates that the pXO1-like plasmids may define pathogenic B. cereus isolates in the same way that pXO1 and pXO2 define the B. anthracis species.
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页码:52 / 64
页数:13
相关论文
共 45 条
[31]   Visualization of comparative genomic analyses by BLAST score ratio [J].
Rasko, DA ;
Myers, GSA ;
Ravel, J .
BMC BIOINFORMATICS, 2005, 6 (1)
[32]   Genomics of the Bacillus cereus group of organisms [J].
Rasko, DA ;
Altherr, MR ;
Han, CS ;
Ravel, J .
FEMS MICROBIOLOGY REVIEWS, 2005, 29 (02) :303-329
[33]   The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1 [J].
Rasko, DA ;
Ravel, J ;
Okstad, OA ;
Helgason, E ;
Cer, RZ ;
Jiang, LX ;
Shores, KA ;
Fouts, DE ;
Tourasse, NJ ;
Angiuoli, SV ;
Kolonay, J ;
Nelson, WC ;
Kolsto, AB ;
Fraser, CM ;
Read, TD .
NUCLEIC ACIDS RESEARCH, 2004, 32 (03) :977-988
[34]   The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria [J].
Read, TD ;
Peterson, SN ;
Tourasse, N ;
Baillie, LW ;
Paulsen, IT ;
Nelson, KE ;
Tettelin, H ;
Fouts, DE ;
Eisen, JA ;
Gill, SR ;
Holtzapple, EK ;
Okstad, OA ;
Helgason, E ;
Rilstone, J ;
Wu, M ;
Kolonay, JF ;
Beanan, MJ ;
Dodson, RJ ;
Brinkac, LM ;
Gwinn, M ;
DeBoy, RT ;
Madpu, R ;
Daugherty, SC ;
Durkin, AS ;
Haft, DH ;
Nelson, WC ;
Peterson, JD ;
Pop, M ;
Khouri, HM ;
Radune, D ;
Benton, JL ;
Mahamoud, Y ;
Jiang, LX ;
Hance, IR ;
Weidman, JF ;
Berry, KJ ;
Plaut, RD ;
Wolf, AM ;
Watkins, KL ;
Nierman, WC ;
Hazen, A ;
Cline, R ;
Redmond, C ;
Thwaite, JE ;
White, O ;
Salzberg, SL ;
Thomason, B ;
Friedlander, AM ;
Koehler, TM ;
Hanna, PC .
NATURE, 2003, 423 (6935) :81-86
[35]   Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis [J].
Read, TD ;
Salzberg, SL ;
Pop, M ;
Shumway, M ;
Umayam, L ;
Jiang, LX ;
Holtzapple, E ;
Busch, JD ;
Smith, KL ;
Schupp, JM ;
Solomon, D ;
Keim, P ;
Fraser, CM .
SCIENCE, 2002, 296 (5575) :2028-2033
[36]   Bacillus thuringiensis and its pesticidal crystal proteins [J].
Schnepf, E ;
Crickmore, N ;
Van Rie, J ;
Lereclus, D ;
Baum, J ;
Feitelson, J ;
Zeigler, DR ;
Dean, DH .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 1998, 62 (03) :775-+
[37]   Bacillus cereus food poisoning and its toxins [J].
Schoeni, JL ;
Wong, ACL .
JOURNAL OF FOOD PROTECTION, 2005, 68 (03) :636-648
[38]   The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state [J].
Strömsten, NJ ;
Benson, SD ;
Burnett, RM ;
Bamford, DH ;
Bamford, JKH .
JOURNAL OF BACTERIOLOGY, 2003, 185 (23) :6985-6989
[39]   ESTIMATION OF THE NUMBER OF NUCLEOTIDE SUBSTITUTIONS IN THE CONTROL REGION OF MITOCHONDRIAL-DNA IN HUMANS AND CHIMPANZEES [J].
TAMURA, K ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1993, 10 (03) :512-526
[40]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680