The structure of protein evolution and the evolution of protein structure

被引:69
作者
Goldstein, Richard A. [1 ]
机构
[1] Natl Inst Med Res, Div Math Biol, London NW7 1AA, England
基金
英国医学研究理事会;
关键词
D O I
10.1016/j.sbi.2008.01.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The observed distribution of protein structures can give us important clues about the underlying evolutionary process, imposing important constraints on possible models. The availability of results from an increasing number of genome projects has made the development of these models an active area of research. Models explaining the observed distribution of structures have focused on the inherent functional capabilities and structural properties of different folds and on the evolutionary dynamics. Increasingly, these elements are being combined.
引用
收藏
页码:170 / 177
页数:8
相关论文
共 84 条
[1]  
Ancel LW, 2000, J EXP ZOOL, V288, P242, DOI 10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO
[2]  
2-O
[3]   Exploring protein sequence space using knowledge-based potentials [J].
Babajide, A ;
Farber, R ;
Hofacker, IL ;
Inman, J ;
Lapedes, AS ;
Stadler, PF .
JOURNAL OF THEORETICAL BIOLOGY, 2001, 212 (01) :35-46
[4]   Physics of proteins [J].
Banavar, Jayanth R. ;
Maritan, Amos .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2007, 36 :261-280
[5]   Physics and evolution of thermophilic adaptation [J].
Berezovsky, IN ;
Shakhnovich, EI .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (36) :12742-12747
[6]   Population dynamics simulations of functional model proteins [J].
Blackburne, BP ;
Hirst, JD .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (15)
[7]   Three-dimensional functional model proteins: Structure function and evolution [J].
Blackburne, BP ;
Hirst, JD .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (06) :3453-3460
[8]   Evolution of functional model proteins [J].
Blackburne, BP ;
Hirst, JD .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (04) :1935-1942
[9]   Protein stability promotes evolvability [J].
Bloom, JD ;
Labthavikul, ST ;
Otey, CR ;
Arnold, FH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) :5869-5874
[10]   Stability and the evolvability of function in a model protein [J].
Bloom, JD ;
Wilke, CO ;
Arnold, FH ;
Adami, C .
BIOPHYSICAL JOURNAL, 2004, 86 (05) :2758-2764