Recent evolutions of multiple sequence alignment algorithms

被引：132

作者：

Notredame, Cedric ^{[1
]}

机构：

[1] Parc Sci Luminy, CNRS, Inst Struct Biol & Microbiol, UPR2589, Marseille, France

来源：

PLOS COMPUTATIONAL BIOLOGY | 2007年 / 3卷 / 08期

关键词：

PROTEIN SEQUENCES; HOMOLOGY; ACCURATE; INFORMATION; KALIGN; COFFEE;

D O I：

10.1371/journal.pcbi.0030123

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

[No abstract available]

引用

页码：1405 / 1408

页数：4

共 34 条

[1] The iRMSD: a local measure of sequence alignment accuracy using structural information [J].

Armougom, Fabrice ;

Moretti, Sebastien ;

Keduas, Vladimir ;

Notredame, Cedric .

BIOINFORMATICS, 2006, 22 (14) :E35-E39

[2] Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-coffee [J].

Armougom, Fabrice ;

Moretti, Sebastien ;

Poirot, Olivier ;

Audic, Stephane ;

Dumas, Pierre ;

Schaeli, Basile ;

Keduas, Vladimir ;

Notredame, Cedric .

NUCLEIC ACIDS RESEARCH, 2006, 34 :W604-W608

[3]

Bauer M, 2005, LECT NOTES COMPUT SC, V3692, P303

[4]

Blackshields Gordon, 2006, In Silico Biol, V6, P321

[5] CaspR: a web server for automated molecular replacement using homology modelling [J].

Claude, JB ;

Suhre, K ;

Notredame, C ;

Claverie, JM ;

Abergel, C .

NUCLEIC ACIDS RESEARCH, 2004, 32 :W606-W609

[6] ProbCons: Probabilistic consistency-based multiple sequence alignment [J].

Do, CB ;

Mahabhashyam, MSP ;

Brudno, M ;

Batzoglou, S .

GENOME RESEARCH, 2005, 15 (02) :330-340

[7] MUSCLE: a multiple sequence alignment method with reduced time and space complexity [J].

Edgar, RC .

BMC BIOINFORMATICS, 2004, 5 (1) :1-19

[8] Multiple sequence alignment [J].

Edgar, Robert C. ;

Batzoglou, Serafim .

CURRENT OPINION IN STRUCTURAL BIOLOGY, 2006, 16 (03) :368-373

[9] Multiple sequence alignment: Algorithms and applications [J].

Gotoh, O .

ADVANCES IN BIOPHYSICS, VOL 36, 1999, 1999, 36 :159-206

[10] The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs [J].

Griffiths-Jones, S ;

Bateman, A .

BIOINFORMATICS, 2002, 18 (09) :1243-1249

← 1 2 3 4 →