Recent evolutions of multiple sequence alignment algorithms

被引:131
作者
Notredame, Cedric [1 ]
机构
[1] Parc Sci Luminy, CNRS, Inst Struct Biol & Microbiol, UPR2589, Marseille, France
关键词
PROTEIN SEQUENCES; HOMOLOGY; ACCURATE; INFORMATION; KALIGN; COFFEE;
D O I
10.1371/journal.pcbi.0030123
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:1405 / 1408
页数:4
相关论文
共 34 条
[1]   The iRMSD: a local measure of sequence alignment accuracy using structural information [J].
Armougom, Fabrice ;
Moretti, Sebastien ;
Keduas, Vladimir ;
Notredame, Cedric .
BIOINFORMATICS, 2006, 22 (14) :E35-E39
[2]   Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-coffee [J].
Armougom, Fabrice ;
Moretti, Sebastien ;
Poirot, Olivier ;
Audic, Stephane ;
Dumas, Pierre ;
Schaeli, Basile ;
Keduas, Vladimir ;
Notredame, Cedric .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W604-W608
[3]  
Bauer M, 2005, LECT NOTES COMPUT SC, V3692, P303
[4]  
Blackshields Gordon, 2006, In Silico Biol, V6, P321
[5]   CaspR: a web server for automated molecular replacement using homology modelling [J].
Claude, JB ;
Suhre, K ;
Notredame, C ;
Claverie, JM ;
Abergel, C .
NUCLEIC ACIDS RESEARCH, 2004, 32 :W606-W609
[6]   ProbCons: Probabilistic consistency-based multiple sequence alignment [J].
Do, CB ;
Mahabhashyam, MSP ;
Brudno, M ;
Batzoglou, S .
GENOME RESEARCH, 2005, 15 (02) :330-340
[7]   MUSCLE: a multiple sequence alignment method with reduced time and space complexity [J].
Edgar, RC .
BMC BIOINFORMATICS, 2004, 5 (1) :1-19
[8]   Multiple sequence alignment [J].
Edgar, Robert C. ;
Batzoglou, Serafim .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2006, 16 (03) :368-373
[9]   Multiple sequence alignment: Algorithms and applications [J].
Gotoh, O .
ADVANCES IN BIOPHYSICS, VOL 36, 1999, 1999, 36 :159-206
[10]   The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs [J].
Griffiths-Jones, S ;
Bateman, A .
BIOINFORMATICS, 2002, 18 (09) :1243-1249