HvrBase: compilation of mtDNA control region sequences from primates

被引:21
作者
Burckhardt, F
von Haeseler, A
Meyer, S
机构
[1] Max Planck Inst Evolut Anthropol, D-04103 Leipzig, Germany
[2] Univ Munich, Inst Zool, D-80333 Munich, Germany
关键词
D O I
10.1093/nar/27.1.138
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
HvrBase is a compilation of human and ape mtDNA control region sequences, Sequences and related information on individuals, such as from where the sequences were obtained, is stored in three ASCII files as described previously. Moreover, the collection is also available as Mac/PC database application with a graphical user interface. It can be accessed through the WWW at URL http://www.eva.mpg.de/hvrbase. The current collection comprises 5846 human sequences from hypervariable region I (HVRI) and 2302 human sequences from hypervariable region II (HVRII). From apes, 295 HVRI sequences and 13 HVRII sequences are available.
引用
收藏
页码:138 / 142
页数:5
相关论文
共 24 条
  • [1] SEQUENCE AND ORGANIZATION OF THE HUMAN MITOCHONDRIAL GENOME
    ANDERSON, S
    BANKIER, AT
    BARRELL, BG
    DEBRUIJN, MHL
    COULSON, AR
    DROUIN, J
    EPERON, IC
    NIERLICH, DP
    ROE, BA
    SANGER, F
    SCHREIER, PH
    SMITH, AJH
    STADEN, R
    YOUNG, IG
    [J]. NATURE, 1981, 290 (5806) : 457 - 465
  • [2] Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee based on nonchimeric sequences
    Arnason, U
    Xu, XF
    Gullberg, A
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1996, 42 (02) : 145 - 152
  • [3] Reexamination of the African Hominoid Trichotomy with Additional Sequences from the Primate beta-Globin Gene Cluster
    Bailey, Wendy J.
    Hayasaka, Kenji
    Skinner, Christopher G.
    Kehoe, Susanne
    Sieu, Leang C.
    Slightom, Jerry L.
    Goodman, Morris
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 1992, 1 (02) : 97 - 135
  • [4] GenBank
    Benson, Dennis A.
    Karsch-Mizrachi, Ilene
    Lipman, David J.
    Ostell, James
    Sayers, Eric W.
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D32 - D37
  • [5] Bortolini MC, 1997, HUM BIOL, V69, P141
  • [6] From Asia to Europe: Mitochondrial DNA sequence variability in Bulgarians and Turks
    Calafell, F
    Underhill, P
    Tolun, A
    Angelicheva, D
    Kalaydjieva, L
    [J]. ANNALS OF HUMAN GENETICS, 1996, 60 : 35 - 49
  • [7] Saami mitochondrial DNA reveals deep maternal lineage clusters
    Delghandi, M
    Utsi, E
    Krauss, S
    [J]. HUMAN HEREDITY, 1998, 48 (02) : 108 - 114
  • [8] COMPARISONS OF APE AND HUMAN SEQUENCES THAT REGULATE MITOCHONDRIAL-DNA TRANSCRIPTION AND D-LOOP DNA-SYNTHESIS
    FORAN, DR
    HIXSON, JE
    BROWN, WM
    [J]. NUCLEIC ACIDS RESEARCH, 1988, 16 (13) : 5841 - 5861
  • [9] Mitochondrial DNA diversity in gorillas
    Garner, KJ
    Ryder, OA
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 1996, 6 (01) : 39 - 48
  • [10] Compilation of human mtDNA control region sequences
    Handt, O
    Meyer, S
    von Haeseler, A
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 126 - 129