DBAli:: a database of protein structure alignments

被引：35

作者：

Martí-Renom, MA ^{[1
]}

Ilyin, VA ^{[1
]}

Sali, A ^{[1
]}

机构：

[1] Rockefeller Univ, Pels Family Ctr Biochem & Struct Biol, Labs Mol Biophys, New York, NY 10021 USA

来源：

BIOINFORMATICS | 2001年 / 17卷 / 08期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1093/bioinformatics/17.8.746

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The DBAli database includes approximately 35 000 alignments of pairs of protein structures from SCOP (Lo Conte et al., Nucleic Acids Res., 28, 257-259, 2000) and CE (Shindyalov and Bourne, Protein Eng., 11, 739-747, 1998). DBAli is linked to several resources, including Compare3D (Shindyalov and Bourne, http://www.sdsc.edu/pb/software.htm, 1999) and ModView (Ilyin and Sali, http://guitar.rockefeller.edu/ModView/, 2001) for visualizing sequence alignments and structure superpositions. A flexible search of DBAli by protein sequence and structure properties allows construction of subsets of alignments suitable for a number of applications, such as benchmarking of sequence-sequence and sequence-structure alignment methods under a variety of conditions.

引用

页码：746 / 747

页数：2

共 19 条

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