DBSubLoc: database of protein subcellular localization

被引：43

作者：

Guo, T ^{[1
]}

Hua, SJ ^{[1
]}

Ji, XL ^{[1
]}

Sun, ZR ^{[1
]}

机构：

[1] Tsing Hua Univ, Inst Bioinformat, Dept Biol Sci & Biotechnol, Beijing 100084, Peoples R China

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh109

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We have built a protein subcellular localization annotation database, the DBSubLoc database, which is available at http://www.bioinfo.tsinghua. edu.cn/dbsubloc.html. Annotations were taken from primary protein databases, model organism genome projects and literature texts, and then were analyzed to dig out the subcellular localization features of the proteins. The proteins are also classified into different categories. Based on sequence alignment non-redundant subsets of the database have been built, which may provide useful information for subcellular localization prediction. The database now contains >60 000 protein sequences including similar to30 000 protein sequences in the non-redundant data sets. Online download, search and Blast tools are also available.

引用

页码：D122 / D124

页数：3

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