Combining Medium Effects and Cofactor Catalysis: Metal-Coordinated Synzymes Accelerate Phosphate Transfer by 108

被引:19
作者
Avenier, Frederic [1 ]
Hollfelder, Florian [1 ]
机构
[1] Univ Cambridge, Dept Biochem, Cambridge CB2 1GA, England
基金
英国工程与自然科学研究理事会;
关键词
bioinorganic chemistry; enzymes; kinetics; metalloenzymes; phosphate transfer; MONONUCLEAR ZN(II) COMPLEX; PHOSPHODIESTER CLEAVAGE; DINUCLEAR; RNA; HYDROLYSIS; DIESTERS; IONS; ACID; TRANSESTERIFICATION; DECARBOXYLATION;
D O I
10.1002/chem.200802616
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The systematic exploration of the modification of polyethylene imine with guanidinium and octyl groups has led to the identification of a catalyst, CD6, which accelerates the phosphate transfer reaction of HPNP (2-hydroxypropyl-4-nitrophenyl phosphate) in the presence of divalent metals such as Zn2+, Co2+, Mg2+ or Ni2+. CD6 exhibits saturation kinetics that are described by Michaelis-Menten parameters K-m ranging from 2.5-8 mM and k(cat) ranging from 0.0014-0.09 s(-1). For Zn-II-CD6 this corresponds to an overall acceleration k(cat)/k(uncat) of 3.8 x 10(5) and a catalytic proficiency (k(cat)/K-m)/k(uncat) of 1.5 x 10(8). Catalysis by Zn-II-CD6 is specifically inhibited by inorganic phosphate, allowing turnover regulation by product inhibition. This effect stands in contrast to Zn-II-catalysed transesterification of HPNP in water or by the synzymes Co-II-CD6 and Ni-II-CD6, with which no such interference by product is observed. These characteristics render synzyme Zn-II-CD6 an efficient enzyme model that reflects enzyme-like properties in a wide range of features.
引用
收藏
页码:12371 / 12380
页数:10
相关论文
共 56 条
[31]   Rapid three-step cleavage of RNA and DNA model systems promoted by a dinuclear Cu(II) complex in methanol. Energetic origins of the catalytic efficacy [J].
Lu, Zhong-Lin ;
Liu, Tony ;
Neverov, Alexei A. ;
Brown, R. Stan .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (37) :11642-11652
[32]   Artificial metallonucleases [J].
Mancin, F ;
Scrimin, P ;
Tecilla, P ;
Tonellato, U .
CHEMICAL COMMUNICATIONS, 2005, (20) :2540-2548
[33]   Nanozymes: Gold-nanoparticle-based transphosphorylation catalysts [J].
Manea, F ;
Houillon, FB ;
Pasquato, L ;
Scrimin, P .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2004, 43 (45) :6165-6169
[34]   Metallodendrimers as transphosphorylation catalysts [J].
Martin, Marco ;
Manea, Flavio ;
Fiammengo, Roberto ;
Prins, Leonard J. ;
Pasquato, Lucia ;
Scrimin, Paolo .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (22) :6982-+
[35]   Dinuclear metallo-phosphodiesterase models: application of calix[4]arenes as molecular scaffolds [J].
Molenveld, P ;
Engbersen, JFJ ;
Reinhoudt, DN .
CHEMICAL SOCIETY REVIEWS, 2000, 29 (02) :75-86
[36]   Dinuclear and trinuclear Zn(II) calix[4]arene complexes as models for hydrolytic metallo-enzymes. Synthesis and catalytic activity in phosphate diester transesterification [J].
Molenveld, P ;
Stikvoort, WMG ;
Kooijman, H ;
Spek, AL ;
Engbersen, JFJ ;
Reinhoudt, DN .
JOURNAL OF ORGANIC CHEMISTRY, 1999, 64 (11) :3896-3906
[37]   Highly efficient phosphate diester transesterification by a calix[4]arene-based dinuclear zinc(II) catalyst [J].
Molenveld, P ;
Kapsabelis, S ;
Engbersen, JFJ ;
Reinhoudt, DN .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (12) :2948-2949
[38]   Synthetic metallonucleases for RNA cleavage [J].
Morrow, JR ;
Iranzo, O .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2004, 8 (02) :192-200
[39]   Combination of a dinuclear Zn2+ complex and a medium effect exerts a 1012-fold rate enhancement of cleavage of an RNA and DNA model system [J].
Neverov, Alexei A. ;
Lu, Zhong-Lin ;
Maxwell, Christopher I. ;
Mohamed, Mark F. ;
White, Christopher J. ;
Tsang, Josephine S. W. ;
Brown, R. Stan .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (50) :16398-16405
[40]   A simple DNase model system comprising a dinuclear Zn(II) complex in methanol accelerates the cleavage of a series of methyl aryl phosphate diesters by 1011-1013 [J].
Neverov, Alexei A. ;
Liu, C. Tony ;
Bunn, Shannon E. ;
Edwards, David ;
White, Christopher J. ;
Melnychuk, Stephanie A. ;
Brown, R. Stan .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (20) :6639-6649