MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism

被引:205
作者
Bandopadhayay, Pratiti [1 ,2 ,3 ,4 ]
Ramkissoon, Lori A. [5 ]
Jain, Payal [6 ,7 ,8 ]
Bergthold, Guillaume [9 ,10 ]
Wala, Jeremiah [1 ,3 ,4 ]
Zeid, Rhamy [4 ,5 ]
Schumacher, Steven E. [1 ,3 ]
Urbanski, Laura [1 ]
O'Rourke, Ryan [1 ,3 ]
Gibson, William J. [1 ,3 ,4 ]
Pelton, Kristine [5 ]
Ramkissoon, Shakti H. [5 ,11 ,12 ,13 ]
Han, Harry J. [6 ,7 ]
Zhu, Yuankun [6 ,7 ]
Choudhari, Namrata [6 ,7 ]
Silva, Amanda [5 ,6 ,7 ]
Boucher, Katie [6 ,7 ]
Henn, Rosemary E. [6 ,7 ]
Kang, Yun Jee [5 ]
Knoff, David [5 ]
Paolella, Brenton R. [1 ,3 ,4 ]
Gladden-Young, Adrianne [14 ]
Varlet, Pascale [15 ]
Pages, Melanie [15 ]
Horowitz, Peleg M. [1 ,16 ]
Federation, Alexander [4 ,5 ]
Malkin, Hayley [2 ]
Tracy, Adam A. [3 ]
Seepo, Sara [3 ]
Ducar, Matthew [11 ,17 ]
Van Hummelen, Paul [17 ]
Santi, Mariarita [18 ,19 ]
Buccoliero, Anna Maria [20 ]
Scagnet, Mirko [21 ]
Bowers, Daniel C. [22 ]
Giannini, Caterina [23 ]
Puget, Stephanie [24 ]
Hawkins, Cynthia [25 ]
Tabori, Uri [26 ]
Klekner, Almos [27 ]
Bognar, Laszlo [27 ]
Burger, Peter C. [28 ]
Eberhart, Charles [28 ]
Rodriguez, Fausto J. [28 ]
Hill, D. Ashley [29 ,30 ,31 ]
Mueller, Sabine [32 ,33 ,34 ]
Haas-Kogan, Daphne A. [33 ,35 ,36 ]
Phillips, Joanna J. [33 ,37 ]
Santagata, Sandro [1 ,11 ,12 ,13 ]
Stiles, Charles D. [1 ]
机构
[1] Dana Farber Canc Inst, Dept Canc Biol, Boston, MA 02115 USA
[2] Dana Farber Boston Childrens Canc & Blood Disorde, Boston, MA USA
[3] Broad Inst, Cambridge, MA USA
[4] Harvard Univ, Sch Med, Boston, MA USA
[5] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA 02115 USA
[6] Childrens Hosp Philadelphia, Div Neurosurg, Philadelphia, PA 19104 USA
[7] Univ Penn, Perelman Sch Med, Dept Neurosurg, Philadelphia, PA 19104 USA
[8] Univ Penn, Perelman Sch Med, Gene Therapy & Vaccines Program, Cell & Mol Biol Grad Grp, Philadelphia, PA 19104 USA
[9] Univ Paris 11, Gustave Roussy, Dept Cancerol Enfant & Adolescent, Villejuif, France
[10] Univ Paris 11, Gustave Roussy, Unite Mixte Rech Ctr Natl Rech Sci Vectorol & Nou, Villejuif, France
[11] Brigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
[12] Boston Childrens Hosp, Dept Pathol, Boston, MA USA
[13] Harvard Univ, Sch Med, Dept Pathol, Boston, MA 02115 USA
[14] Broad Inst, Broad Technol Labs, Cambridge, MA USA
[15] Univ Paris V Descartes, Hop St Anne, Neuropathol Lab, Paris, France
[16] Brigham & Womens Hosp, Dept Neurosurg, 75 Francis St, Boston, MA 02115 USA
[17] Dana Farber Canc Inst, Ctr Canc Genome Discovery, Boston, MA 02115 USA
[18] Childrens Hosp Philadelphia, Dept Pathol & Lab Med, Philadelphia, PA 19104 USA
[19] Univ Penn, Perelman Sch Med, Dept Pathol & Lab Med, Philadelphia, PA 19104 USA
[20] Anna Meyer Childrens Univ Hosp, Pathol Unit, Florence, Italy
[21] Univ Florence, Anna Meyer Childrens Hosp, Neurosurg Unit, Florence, Italy
[22] Univ Texas Southwestern Med Sch, Div Pediat Hematol Oncol, Dallas, TX USA
[23] Mayo Clin, Dept Lab Med & Pathol, Rochester, MN USA
[24] Univ Paris V Descartes, Hop Necker Enfants Malad, Dept Neurochirurg, Paris, France
[25] Hosp Sick Children, Div Pathol, 555 Univ Ave, Toronto, ON M5G 1X8, Canada
[26] Hosp Sick Children, Div Haematol Oncol, 555 Univ Ave, Toronto, ON M5G 1X8, Canada
[27] Univ Debrecen, Med & Hlth Sci Ctr, Dept Neurosurg, Debrecen, Hungary
[28] Johns Hopkins Univ, Sch Med, Dept Pathol, Baltimore, MD 21205 USA
[29] Childrens Natl Med Ctr, Brain Tumor Inst, Washington, DC 20010 USA
[30] Childrens Natl Med Ctr, Ctr Neurosci & Behav Med, Brain Tumor Inst, Washington, DC 20010 USA
[31] Childrens Natl Med Ctr, Dept Pathol, Washington, DC 20010 USA
[32] Univ Calif San Francisco, Sch Med, Dept Neurol, San Francisco, CA USA
[33] Univ Calif San Francisco, Sch Med, Dept Neurol Surg, San Francisco, CA USA
[34] Univ Calif San Francisco, Sch Med, Dept Pediat, San Francisco, CA 94143 USA
[35] Univ Calif San Francisco, Sch Med, Dept Radiat Oncol, Helen Diller Family Comprehens Canc Ctr, San Francisco, CA 94143 USA
[36] Harvard Univ, Sch Med, Dana Farber Canc Inst, Dept Radiat Oncol,Brigham & Womens Hosp,Boston Ch, 44 Binney St, Boston, MA 02115 USA
[37] Univ Calif San Francisco, Dept Pathol, San Francisco, CA 94140 USA
[38] Harvard Univ, Sch Med, Dept Med, Boston, MA USA
[39] McGill Univ, Montreal Childrens Hosp, Div Expt Med, Montreal, PQ H3H 1P3, Canada
[40] McGill Univ, Ctr Hlth, Montreal, PQ, Canada
[41] McGill Univ, Dept Human Genet, Montreal, PQ, Canada
[42] McGill Univ, Dept Pediat, Montreal, PQ H3A 2T5, Canada
[43] Brigham & Womens Hosp, Dept Pathol, Cytogenet Div, Ctr Adv Mol Diagnost, 75 Francis St, Boston, MA 02115 USA
[44] Boston Childrens Hosp, Dept Neurosurg, Boston, MA USA
[45] Harvard Univ, Sch Med, Dept Neurosurg, Boston, MA USA
[46] Childrens Hosp Philadelphia, Div Oncol, Philadelphia, PA 19104 USA
[47] Childrens Hosp Philadelphia, Ctr Childhood Canc Res, Philadelphia, PA 19104 USA
[48] Univ Penn, Dept Pediat, Perelman Sch Med, Philadelphia, PA 19104 USA
[49] Childrens Hosp Philadelphia, Dept Biomed & Hlth Informat, Philadelphia, PA 19104 USA
[50] Childrens Hosp Philadelphia, Ctr Data Driven Discovery Biomed, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
BET BROMODOMAIN INHIBITION; ADENOID CYSTIC CARCINOMA; LOW-GRADE GLIOMAS; NEURAL STEM-CELL; C-MYB; V-MYB; CANCER; PROTEIN; GENE; TRANSFORMATION;
D O I
10.1038/ng.3500
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Angiocentric gliomas are pediatric low-grade gliomas (PLGGs) without known recurrent genetic drivers. We performed genomic analysis of new and published data from 249 PLGGs, including 19 angiocentric gliomas. We identified MYB-QKI fusions as a specific and single candidate driver event in angiocentric gliomas. In vitro and in vivo functional studies show that MYB-QKI rearrangements promote tumorigenesis through three mechanisms: MYB activation by truncation, enhancer translocation driving aberrant MYB-QKI expression and hemizygous loss of the tumor suppressor QKI. To our knowledge, this represents the first example of a single driver rearrangement simultaneously transforming cells via three genetic and epigenetic mechanisms in a tumor.
引用
收藏
页码:273 / 282
页数:10
相关论文
共 42 条
[1]   Epidermal growth factor receptor and Ink4a/Arf:: Convergent mechanisms governing terminal differentiation and transformation along the neural stem cell to astrocyte axis [J].
Bachoo, RM ;
Maher, EA ;
Ligon, KL ;
Sharpless, NE ;
Chan, SS ;
You, MJJ ;
Tang, Y ;
DeFrances, J ;
Stover, E ;
Weissleder, R ;
Rowitch, DH ;
Louis, DN ;
DePinho, RA .
CANCER CELL, 2002, 1 (03) :269-277
[2]   BET Bromodomain Inhibition of MYC-Amplified Medulloblastoma [J].
Bandopadhayay, Pratiti ;
Bergthold, Guillaume ;
Nguyen, Brian ;
Schubert, Simone ;
Gholamin, Sharareh ;
Tang, Yujie ;
Bolin, Sara ;
Schumacher, Steven E. ;
Zeid, Rhamy ;
Masoud, Sabran ;
Yu, Furong ;
Vue, Nujsaubnusi ;
Gibson, William J. ;
Paolella, Brenton R. ;
Mitra, Siddhartha S. ;
Cheshier, Samuel H. ;
Qi, Jun ;
Liu, Kun-Wei ;
Wechsler-Reya, Robert ;
Weiss, William A. ;
Swartling, Fredrik J. ;
Kieran, Mark W. ;
Bradner, James E. ;
Beroukhim, Rameen ;
Cho, Yoon-Jae .
CLINICAL CANCER RESEARCH, 2014, 20 (04) :912-925
[3]   Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma [J].
Beroukhim, Rameen ;
Getz, Gad ;
Nghiemphu, Leia ;
Barretina, Jordi ;
Hsueh, Teli ;
Linhart, David ;
Vivanco, Igor ;
Lee, Jeffrey C. ;
Huang, Julie H. ;
Alexander, Sethu ;
Du, Jinyan ;
Kau, Tweeny ;
Thomas, Roman K. ;
Shah, Kinial ;
Soto, Horacio ;
Perner, Sven ;
Prensner, John ;
Debiasi, Ralph M. ;
Demichelis, Francesca ;
Hatton, Charlie ;
Rubin, Mark A. ;
Garraway, Levi A. ;
Nelson, Stan F. ;
Liau, Linda ;
Mischel, Paul S. ;
Cloughesy, Tim F. ;
Meyerson, Matthew ;
Golub, Todd A. ;
Lander, Eric S. ;
Mellinghoff, Ingo K. ;
Sellers, William R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (50) :20007-20012
[4]   Downregulation of tumor suppressor QKI in gastric cancer and its implication in cancer prognosis [J].
Bian, Yongqian ;
Wang, Li ;
Lu, Huanyu ;
Yang, Guodong ;
Zhang, Zhang ;
Fu, Haiyan ;
Lu, Xiaozhao ;
Wei, Mengying ;
Sun, Jianyong ;
Zhao, Qingchuan ;
Dong, Guanglong ;
Lu, Zifan .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2012, 422 (01) :187-193
[5]   STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA [J].
Chen, An-Jou ;
Paik, Ji-Hye ;
Zhang, Hailei ;
Shukla, Sachet A. ;
Mortensen, Richard ;
Hu, Jian ;
Ying, Haoqiang ;
Hu, Baoli ;
Hurt, Jessica ;
Farny, Natalie ;
Dong, Caroline ;
Xiao, Yonghong ;
Wang, Y. Alan ;
Silver, Pamela A. ;
Chin, Lynda ;
Vasudevan, Shobha ;
DePinho, Ronald A. .
GENES & DEVELOPMENT, 2012, 26 (13) :1459-1472
[6]   CDK7 Inhibition Suppresses Super-Enhancer-Linked Oncogenic Transcription in MYCN-Driven Cancer [J].
Chipumuro, Edmond ;
Marco, Eugenio ;
Christensen, Camilla L. ;
Kwiatkowski, Nicholas ;
Zhang, Tinghu ;
Hatheway, Clark M. ;
Abraham, Brian J. ;
Sharma, Bandana ;
Yeung, Caleb ;
Altabef, Abigail ;
Perez-Atayde, Antonio ;
Wong, Kwok-Kin ;
Yuan, Guo-Cheng ;
Gray, Nathanael S. ;
Young, Richard A. ;
George, Rani E. .
CELL, 2014, 159 (05) :1126-1139
[7]   The RNA Binding Protein Quaking Regulates Formation of circRNAs [J].
Conn, Simon J. ;
Pillman, Katherine A. ;
Toubia, John ;
Conn, Vanessa M. ;
Salmanidis, Marika ;
Phillips, Caroline A. ;
Roslan, Suraya ;
Schreiber, Andreas W. ;
Gregory, Philip A. ;
Goodall, Gregory J. .
CELL, 2015, 160 (06) :1125-1134
[8]   The Genomic Landscape of Pediatric Ewing Sarcoma [J].
Crompton, Brian D. ;
Stewart, Chip ;
Taylor-Weiner, Amaro ;
Alexe, Gabriela ;
Kurek, Kyle C. ;
Calicchio, Monica L. ;
Kiezun, Adam ;
Carter, Scott L. ;
Shukla, Sachet A. ;
Mehta, Swapnil S. ;
Thorner, Aaron R. ;
de Torres, Carmen ;
Lavarino, Cinzia ;
Sunol, Mariona ;
McKenna, Aaron ;
Sivachenko, Andrey ;
Cibulskis, Kristian ;
Lawrence, Michael S. ;
Stojanov, Petar ;
Rosenberg, Mara ;
Ambrogio, Lauren ;
Auclair, Daniel ;
Seepo, Sara ;
Blumenstiel, Brendan ;
DeFelice, Matthew ;
Imaz-Rosshandler, Ivan ;
Schwarz-Cruz y Celis, Angela ;
Rivera, Miguel N. ;
Rodriguez-Galindo, Carlos ;
Fleming, Mark D. ;
Golub, Todd R. ;
Getz, Gad ;
Mora, Jaume ;
Stegmaier, Kimberly .
CANCER DISCOVERY, 2014, 4 (11) :1326-1341
[9]   MYB-NFIB gene fusion in adenoid cystic carcinoma of the breast with special focus paid to the solid variant with basaloid features [J].
D'Alfonso, Timothy M. ;
Mosquera, Juan Miguel ;
MacDonald, Theresa Y. ;
Padilla, Jessica ;
Liu, Yi-Fang ;
Rubin, Mark A. ;
Shin, Sandra J. .
HUMAN PATHOLOGY, 2014, 45 (11) :2270-2280
[10]   Identification of recurrent regulated alternative splicing events across human solid tumors [J].
Danan-Gotthold, Miri ;
Golan-Gerstl, Regina ;
Eisenberg, Eli ;
Meir, Keren ;
Karni, Rotem ;
Levanon, Erez Y. .
NUCLEIC ACIDS RESEARCH, 2015, 43 (10) :5130-5144