Detecting the undetectable:: uncovering duplicated segments in Arabidopsis by comparison with rice

被引:44
作者
Vandepoele, K [1 ]
Simillion, C [1 ]
Van de Peer, Y [1 ]
机构
[1] State Univ Ghent VIB, Dept Plant Syst Biol, B-9000 Ghent, Belgium
关键词
D O I
10.1016/S0168-9525(02)02796-8
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Genome analysis shows that large-scale gene duplications have occurred in fungi, animals and plants, creating genomic regions that show similarity in gene content and order. However the high frequency of gene loss reduces colinearity resulting in duplicated regions that, in the extreme, no longer share homologous genes. Here, we show that by comparison with an appropriate second genome, such paralogous regions can still be identified.
引用
收藏
页码:606 / 608
页数:3
相关论文
共 21 条
[1]   Extensive duplication and reshuffling in the arabidopsis genome [J].
Blanc, G ;
Barakat, A ;
Guyot, R ;
Cooke, R ;
Delseny, I .
PLANT CELL, 2000, 12 (07) :1093-1101
[2]  
Force A, 1999, GENETICS, V151, P1531
[3]   Gene duplication and the structure of eukaryotic genomes [J].
Friedman, R ;
Hughes, AL .
GENOME RESEARCH, 2001, 11 (03) :373-381
[4]   Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses [J].
Gaut, BS .
GENOME RESEARCH, 2001, 11 (01) :55-66
[5]   Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins [J].
Gibson, TJ ;
Spring, J .
TRENDS IN GENETICS, 1998, 14 (02) :46-49
[6]   A draft sequence of the rice genome (Oryza sativa L. ssp japonica) [J].
Goff, SA ;
Ricke, D ;
Lan, TH ;
Presting, G ;
Wang, RL ;
Dunn, M ;
Glazebrook, J ;
Sessions, A ;
Oeller, P ;
Varma, H ;
Hadley, D ;
Hutchinson, D ;
Martin, C ;
Katagiri, F ;
Lange, BM ;
Moughamer, T ;
Xia, Y ;
Budworth, P ;
Zhong, JP ;
Miguel, T ;
Paszkowski, U ;
Zhang, SP ;
Colbert, M ;
Sun, WL ;
Chen, LL ;
Cooper, B ;
Park, S ;
Wood, TC ;
Mao, L ;
Quail, P ;
Wing, R ;
Dean, R ;
Yu, YS ;
Zharkikh, A ;
Shen, R ;
Sahasrabudhe, S ;
Thomas, A ;
Cannings, R ;
Gutin, A ;
Pruss, D ;
Reid, J ;
Tavtigian, S ;
Mitchell, J ;
Eldredge, G ;
Scholl, T ;
Miller, RM ;
Bhatnagar, S ;
Adey, N ;
Rubano, T ;
Tusneem, N .
SCIENCE, 2002, 296 (5565) :92-100
[7]   Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].
Kaul, S ;
Koo, HL ;
Jenkins, J ;
Rizzo, M ;
Rooney, T ;
Tallon, LJ ;
Feldblyum, T ;
Nierman, W ;
Benito, MI ;
Lin, XY ;
Town, CD ;
Venter, JC ;
Fraser, CM ;
Tabata, S ;
Nakamura, Y ;
Kaneko, T ;
Sato, S ;
Asamizu, E ;
Kato, T ;
Kotani, H ;
Sasamoto, S ;
Ecker, JR ;
Theologis, A ;
Federspiel, NA ;
Palm, CJ ;
Osborne, BI ;
Shinn, P ;
Conway, AB ;
Vysotskaia, VS ;
Dewar, K ;
Conn, L ;
Lenz, CA ;
Kim, CJ ;
Hansen, NF ;
Liu, SX ;
Buehler, E ;
Altafi, H ;
Sakano, H ;
Dunn, P ;
Lam, B ;
Pham, PK ;
Chao, Q ;
Nguyen, M ;
Yu, GX ;
Chen, HM ;
Southwick, A ;
Lee, JM ;
Miranda, M ;
Toriumi, MJ ;
Davis, RW .
NATURE, 2000, 408 (6814) :796-815
[8]   Comparing sequenced segments of the tomato and Arabidopsis genomes:: Large-scale duplication followed by selective gene loss creates a network of synteny [J].
Ku, HM ;
Vision, T ;
Liu, JP ;
Tanksley, SD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (16) :9121-9126
[9]   The evolutionary fate and consequences of duplicate genes [J].
Lynch, M ;
Conery, JS .
SCIENCE, 2000, 290 (5494) :1151-1155
[10]  
Lynch M, 2000, GENETICS, V154, P459