Candidatus "Scalindua brodae", sp nov., Candidatus "Scalindua wagneri", sp nov., two new species of anaerobic ammonium oxidizing bacteria

被引:586
作者
Schmid, M
Walsh, K
Webb, R
Rijpstra, WIC
van de Pas-Schoonen, K
Verbruggen, MJ
Hill, T
Moffett, B
Fuerst, J
Schouten, S
Damsté, JSS
Harris, J
Shaw, P
Jetten, M
Strous, M
机构
[1] Univ Nijmegen, Fac Sci, Dept Microbiol, NL-6500 GL Nijmegen, Netherlands
[2] Cranfield Univ, Inst Water & Environm, Cranfield MK43 0AL, Beds, England
[3] Royal Netherlands Inst Sea Res, Dept Marine Biogeochem & Toxicol, Den Burg, Netherlands
[4] Univ Queensland, Dept Microbiol, Brisbane, Qld 4072, Australia
[5] Univ E London, Sch Biosci, London E15 4LZ, England
[6] Delft Univ Technol, Kluyver Lab Biotechnol, Delft, Netherlands
关键词
ammonium; nitrite; nitrate; 16S rRNA approach;
D O I
10.1078/072320203770865837
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Anaerobic ammonium oxidation (anammox) is both a promising process in wastewater treatment and a long overlooked microbial physiology that can contribute significantly to biological nitrogen cycling in the world's oceans. Anammox is mediated by a monophyletic group of bacteria that branches deeply in the Planctomycetales. Here we describe a new genus and species of anaerobic ammonium oxidizing planctomycetes, discovered in a wastewater treatment plant (wwtp) treating landfill leachate in Pitsea, UK. The biomass from this wwtp showed high anammox activity (5.0 +/- 0.5 nmol/mg protein/min) and produced hydrazine from hydroxylamine, one of the unique features of anammox bacteria. Eight new planctomycete 16S rRNA gene sequences were present in the 16S rRNA gene clone library generated from the biomass. Four of these were affiliated to known anammox 16S rRNA gene sequences, but branched much closer to the root of the planctomycete line of descent. Fluorescence in situ hybridization (FISH) with oligonucleotide probes specific for these new sequences showed that two species (belonging to the same genus) together made up > 99% of the planctomycete population which constituted 20% of the total microbial community. The identification of these organisms as typical anammox bacteria was confirmed with electron microscopy and lipid analysis. The new species, provisionally named Candidatus "Scalindua brodae" and "Scalindua wagneri" considerably extend the biodiversity of the anammox lineage on the 16S rRNA gene level, but otherwise resemble known anammox bacteria. Simultaneously, another new species of the same genus, Candidatus "Scalindua sorokinii", was detected in the water column of the Black Sea, making this genus the most widespread of all anammox bacteria described so far.
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页码:529 / 538
页数:10
相关论文
共 32 条
  • [1] The oligonucleotide probe database
    Alm, EW
    Oerther, DB
    Larsen, N
    Stahl, DA
    Raskin, L
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1996, 62 (10) : 3557 - 3559
  • [2] COMBINATION OF 16S RIBOSOMAL-RNA-TARGETED OLIGONUCLEOTIDE PROBES WITH FLOW-CYTOMETRY FOR ANALYZING MIXED MICROBIAL-POPULATIONS
    AMANN, RI
    BINDER, BJ
    OLSON, RJ
    CHISHOLM, SW
    DEVEREUX, R
    STAHL, DA
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1990, 56 (06) : 1919 - 1925
  • [3] Phylogeny - A non-hyperthermophilic ancestor for bacteria
    Brochier, C
    Philippe, H
    [J]. NATURE, 2002, 417 (6886) : 244 - 244
  • [4] 2 KINDS OF LITHOTROPHS MISSING IN NATURE
    BRODA, E
    [J]. ZEITSCHRIFT FUR ALLGEMEINE MIKROBIOLOGIE, 1977, 17 (06): : 491 - 493
  • [5] BROSIUS J, 1978, P NATL ACAD SCI USA, V75, P4801, DOI 10.1073/pnas.75.10.4801
  • [6] The domain-specific probe EUB338 is insufficient for the detection of all Bacteria:: Development and evaluation of a more comprehensive probe set
    Daims, H
    Brühl, A
    Amann, R
    Schleifer, KH
    Wagner, M
    [J]. SYSTEMATIC AND APPLIED MICROBIOLOGY, 1999, 22 (03) : 434 - 444
  • [7] Linearly concatenated cyclobutane lipids form a dense bacterial membrane
    Damsté, JSS
    Strous, M
    Rijpstra, WIC
    Hopmans, EC
    Geenevasen, JAJ
    van Duin, ACT
    van Niftrik, LA
    Jetten, MSM
    [J]. NATURE, 2002, 419 (6908) : 708 - 712
  • [8] Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate
    Egli, K
    Fanger, U
    Alvarez, PJJ
    Siegrist, H
    van der Meer, JR
    Zehnder, AJB
    [J]. ARCHIVES OF MICROBIOLOGY, 2001, 175 (03) : 198 - 207
  • [9] Deammonification in biofilm systems: population structure and function
    Helmer-Madhok, C
    Schmid, M
    Filipov, E
    Gaul, T
    Hippen, A
    Rosenwinkel, KH
    Seyfried, CF
    Wagner, M
    Kunst, S
    [J]. WATER SCIENCE AND TECHNOLOGY, 2002, 46 (1-2) : 223 - 231
  • [10] IMAJO U, 2001, GENBANK DIRECT SUBMI