GDdom: An Online Tool for Calculation of Dominant Marker Gene Diversity

被引：30

作者：

Abuzayed, Mazen ^{[1
]}

El-Dabba, Nourhan ^{[2
]}

Frary, Anne ^{[1
]}

Doganlar, Sami ^{[1
]}

机构：

[1] Izmir Inst Technol, Dept Mol Biol & Genet, TR-35430 Izmir, Turkey

[2] Izmir Inst Technol, Dept Comp Engn, TR-35430 Izmir, Turkey

来源：

BIOCHEMICAL GENETICS | 2017年 / 55卷 / 02期

关键词：

Molecular markers; PIC; Polymorphism information content; SOUTHWEST CHINA; GERMPLASM;

D O I：

10.1007/s10528-016-9779-0

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

Gene diversity (GD), also called polymorphism information content, is a commonly used measure of molecular marker polymorphism. Calculation of GD for dominant markers such as AFLP, RAPD, and multilocus SSRs is valuable for researchers. To meet this need, we developed a free online computer program, GDdom, which provides easy, quick, and accurate calculation of dominant marker GD with a commonly used formula. Results are presented in tabular form for quick interpretation.

引用

页码：155 / 157

页数：3

共 9 条

[1]

Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing [J].

Celik, Ibrahim ;

Gultekin, Visam ;

Allmer, Jens ;

Doganlar, Sami ;

Frary, Anne .

MOLECULAR BREEDING, 2014, 34 (02) :323-334

[2]

Molecular Insights into the Genetic Diversity of Hemarthria compressa Germplasm Collections Native to Southwest China [J].

Guo, Zhi-Hui ;

Fu, Kai-Xin ;

Zhang, Xin-Quan ;

Bai, Shi-Qie ;

Fan, Yan ;

Peng, Yan ;

Huang, Lin-Kai ;

Yan, Yan-Hong ;

Liu, Wei ;

Ma, Xiao .

MOLECULES, 2014, 19 (12) :21541-21559

[3]

Joshi SP, 1999, CURR SCI INDIA, V77, P230

[4]

Analysis of genetic diversity among wild bermudagrass germplasm from southwest China using SSR markers [J].

Ling, Y. ;

Zhang, X. -Q. ;

Ma, X. ;

Chen, S. -Y. ;

Chen, T. -T. ;

Liu, W. .

GENETICS AND MOLECULAR RESEARCH, 2012, 11 (04) :4598-4608

[5]

ANALYSIS OF GENE DIVERSITY IN SUBDIVIDED POPULATIONS [J].

NEI, M .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1973, 70 (12) :3321-3323

[6]

Piepho HP, 2000, GENETICS, V155, P1459

[7]

AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.) [J].

Roldán-Ruiz, I ;

Dendauw, J ;

Van Bockstaele, E ;

Depicker, A ;

De Loose, M .

MOLECULAR BREEDING, 2000, 6 (02) :125-134

[8]

On estimating the heterozygosity and polymorphism information content value [J].

Shete, S ;

Tiwari, H ;

Elston, RC .

THEORETICAL POPULATION BIOLOGY, 2000, 57 (03) :265-271

[9]

Uncu A. O., 2015, PLANT GENOME, V8, P1, DOI [10.3835/ plantgenome2014.11.0087, DOI 10.3835/PLANTGEN0ME2014.11.0087]

← 1 →