The rice kinase database. A phylogenomic database for the rice kinome

被引：112

作者：

Dardick, Christopher

Chen, Johann

Richter, Todd

Ouyang, Shu

Ronald, Pamela

机构：

[1] USDA ARS, Appalachian Fruit Res Stn, Kearneysville, WV 25430 USA

[2] Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA

[3] Inst Gen Res, Rockville, MD 20853 USA

来源：

PLANT PHYSIOLOGY | 2007年 / 143卷 / 02期

关键词：

D O I：

10.1104/pp.106.087270

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

The rice (Oryza sativa) genome contains 1,429 protein kinases, the vast majority of which have unknown functions. We created a phylogenomic database (http://rkd.ucdavis.edu) to facilitate functional analysis of this large gene family. Sequence and genomic data, including gene expression data and protein-protein interaction maps, can be displayed for each selected kinase in the context of a phylogenetic tree allowing for comparative analysis both within and between large kinase subfamilies. Interaction maps are easily accessed through links and displayed using Cytoscape, an open source software platform. Chromosomal distribution of all rice kinases can also be explored via an interactive interface.

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收藏

页码：579 / 586

页数：8

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