The automation of nested clade phylogeographic analysis

被引：120

作者：

Panchal, Mahesh ^{[1
]}

机构：

[1] Univ Reading, Sch Biol Sci, Reading RG6 6AJ, Berks, England

来源：

BIOINFORMATICS | 2007年 / 23卷 / 04期

基金：

英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btl614

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

ANeCA is a fully automated implementation of Nested Clade Phylogeographic Analysis. This was originally developed by Templeton and colleagues, and has been used to infer, from the pattern of gene sequence polymorphisms in a geographically structured population, the historical demographic processes that have shaped its evolution. Until now it has been necessary to perform large parts of the procedure manually. We provide a program that will take data in Nexus sequential format, and directly output a set of inferences. The software also includes TCS v1.18 and GeoDis v2.2 as part of automation.

引用

页码：509 / 510

页数：2

共 8 条

[1] TCS: a computer program to estimate gene genealogies [J].

Clement, M ;

Posada, D ;

Crandall, KA .

MOLECULAR ECOLOGY, 2000, 9 (10) :1657-1659

[2] Statistical phylogeography [J].

Knowles, LL ;

Maddison, WP .

MOLECULAR ECOLOGY, 2002, 11 (12) :2623-2635

[3] GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes [J].

Posada, D ;

Crandall, KA ;

Templeton, AR .

MOLECULAR ECOLOGY, 2000, 9 (04) :487-488

[4] Nested clade analysis statistics [J].

Posada, David ;

Crandall, Keith A. ;

Templeton, Alan R. .

MOLECULAR ECOLOGY NOTES, 2006, 6 (03) :590-593

[5]

TEMPLETON AR, 1995, GENETICS, V140, P767

[6] Statistical phylogeography: methods of evaluating and minimizing inference errors [J].

Templeton, AR .

MOLECULAR ECOLOGY, 2004, 13 (04) :789-809

[7]

TEMPLETON AR, 1992, GENETICS, V132, P619

[8] AUTOINFER1.0: a computer program to infer biogeographical events automatically [J].

Zhang, Ai-Bing ;

Tan, Shengjiang ;

Sota, Teiji .

MOLECULAR ECOLOGY NOTES, 2006, 6 (03) :597-599

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