共 70 条
Activation of gene expression by small RNA
被引:197
作者:

Froehlich, Kathrin S.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany

Vogel, Joerg
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany
机构:
[1] Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany
关键词:
SMALL REGULATORY RNA;
STAPHYLOCOCCUS-AUREUS RNAIII;
ESCHERICHIA-COLI;
MESSENGER-RNA;
NONCODING RNAS;
SOLUBLE-RNA;
DSRA RNA;
DISCOORDINATE EXPRESSION;
TRANSLATIONAL INITIATION;
SALMONELLA-TYPHIMURIUM;
D O I:
10.1016/j.mib.2009.09.009
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Small regulatory RNAs (sRNAs) commonly act to downregulate gene expression. In bacteria, however, sRNAs have also been shown to activate genes by a variety of direct or indirect mechanisms. Several sRNAs (DsrA, GImZ, RNAIII, RprA, RyhB, and Qrr) act as direct translational activators by an 'antiantisense mechanism' in the 5' mRNA region to liberate a sequestered ribosome binding site, while pairing of GadY sRNA to the 3'-end alters processing and increases stability of its target mRNA. Indirect activation includes cases of RNA mimicry in which degradation of the activating GImZ sRNA is suppressed by the highly similar GImY sRNA, or where a pseudo-target mRNA traps MicM sRNA to derepress porin synthesis.
引用
收藏
页码:674 / 682
页数:9
相关论文
共 70 条
[1]
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB
[J].
Afonyushkin, T
;
Vecerek, B
;
Moll, I
;
Bläsi, U
;
Kaberdin, VR
.
NUCLEIC ACIDS RESEARCH,
2005, 33 (05)
:1678-1689

Afonyushkin, T
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria

Vecerek, B
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria

Moll, I
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria

Bläsi, U
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria

Kaberdin, VR
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria Univ Vienna, Bioctr, Dept Microbiol & Immunobiol, Max F Perutz Labs, A-1030 Vienna, Austria
[2]
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA
[J].
Arluison, Veronique
;
Hohng, Sungchul
;
Roy, Rahul
;
Pellegrini, Olivier
;
Regnier, Philippe
;
Ha, Taekjip
.
NUCLEIC ACIDS RESEARCH,
2007, 35 (03)
:999-1006

Arluison, Veronique
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Dept Phys, Urbana, IL 61081 USA

Hohng, Sungchul
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Dept Phys, Urbana, IL 61081 USA

Roy, Rahul
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Dept Phys, Urbana, IL 61081 USA

Pellegrini, Olivier
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Dept Phys, Urbana, IL 61081 USA

Regnier, Philippe
论文数: 0 引用数: 0
h-index: 0
机构: Univ Illinois, Dept Phys, Urbana, IL 61081 USA

Ha, Taekjip
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL 61081 USA Univ Illinois, Dept Phys, Urbana, IL 61081 USA
[3]
CsrB sRNA family: sequestration of RNA-binding regulatory proteins
[J].
Babitzke, Paul
;
Romeo, Tony
.
CURRENT OPINION IN MICROBIOLOGY,
2007, 10 (02)
:156-163

Babitzke, Paul
论文数: 0 引用数: 0
h-index: 0
机构:
Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA

Romeo, Tony
论文数: 0 引用数: 0
h-index: 0
机构: Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[4]
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism
[J].
Boisset, Sandrine
;
Geissmann, Thomas
;
Huntzinger, Eric
;
Fechter, Pierre
;
Bendridi, Nadia
;
Possedko, Maria
;
Chevalier, Clement
;
Helfer, Anne Catherine
;
Benito, Yvonne
;
Jacquier, Alain
;
Gaspin, Christine
;
Vandenesch, Francois
;
Romby, Pascale
.
GENES & DEVELOPMENT,
2007, 21 (11)
:1353-1366

Boisset, Sandrine
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Geissmann, Thomas
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Huntzinger, Eric
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Fechter, Pierre
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Bendridi, Nadia
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Possedko, Maria
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Chevalier, Clement
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Helfer, Anne Catherine
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Benito, Yvonne
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

论文数: 引用数:
h-index:
机构:

Gaspin, Christine
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Vandenesch, Francois
论文数: 0 引用数: 0
h-index: 0
机构: Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France

Romby, Pascale
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France Univ Strasbourg 1, CNRS, Inst Biol Mol & Cellulaire, Architecture & React lARN, F-67084 Strasbourg, France
[5]
Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation
[J].
Bouvier, Marie
;
Sharma, Cynthia M.
;
Mika, Franziska
;
Nierhaus, Knud H.
;
Vogel, Joerg
.
MOLECULAR CELL,
2008, 32 (06)
:827-837

Bouvier, Marie
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany

Sharma, Cynthia M.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany

Mika, Franziska
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany

Nierhaus, Knud H.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Mol Genet, AG Ribosomen, D-14195 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany

Vogel, Joerg
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany Max Planck Inst Infect Biol, RNA Biol Grp, D-10117 Berlin, Germany
[6]
Hfq structure, function and ligand binding
[J].
Brennan, Richard G.
;
Link, Todd M.
.
CURRENT OPINION IN MICROBIOLOGY,
2007, 10 (02)
:125-133

Brennan, Richard G.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas, MD Anderson Canc Ctr, Dept Biochem & Mol Biol, Unit 1000, Houston, TX 77030 USA Univ Texas, MD Anderson Canc Ctr, Dept Biochem & Mol Biol, Unit 1000, Houston, TX 77030 USA

Link, Todd M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas, MD Anderson Canc Ctr, Dept Biochem & Mol Biol, Unit 1000, Houston, TX 77030 USA Univ Texas, MD Anderson Canc Ctr, Dept Biochem & Mol Biol, Unit 1000, Houston, TX 77030 USA
[7]
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure
[J].
Brescia, CC
;
Mikulecky, PJ
;
Feig, AL
;
Sledjeski, DD
.
RNA,
2003, 9 (01)
:33-43

Brescia, CC
论文数: 0 引用数: 0
h-index: 0
机构: Med Coll Ohio, Dept Microbiol & Immunol, Toledo, OH 43614 USA

Mikulecky, PJ
论文数: 0 引用数: 0
h-index: 0
机构: Med Coll Ohio, Dept Microbiol & Immunol, Toledo, OH 43614 USA

Feig, AL
论文数: 0 引用数: 0
h-index: 0
机构: Med Coll Ohio, Dept Microbiol & Immunol, Toledo, OH 43614 USA

Sledjeski, DD
论文数: 0 引用数: 0
h-index: 0
机构:
Med Coll Ohio, Dept Microbiol & Immunol, Toledo, OH 43614 USA Med Coll Ohio, Dept Microbiol & Immunol, Toledo, OH 43614 USA
[8]
Revisiting the principles of microRNA target recognition and mode of action
[J].
Brodersen, Peter
;
Voinnet, Olivier
.
NATURE REVIEWS MOLECULAR CELL BIOLOGY,
2009, 10 (02)
:141-148

Brodersen, Peter
论文数: 0 引用数: 0
h-index: 0
机构:
CNRS, Inst Biol Mol Plantes, F-67084 Strasbourg, France CNRS, Inst Biol Mol Plantes, F-67084 Strasbourg, France

Voinnet, Olivier
论文数: 0 引用数: 0
h-index: 0
机构:
CNRS, Inst Biol Mol Plantes, F-67084 Strasbourg, France CNRS, Inst Biol Mol Plantes, F-67084 Strasbourg, France
[9]
Mutations that increase expression of the rpoS gene and decrease its dependence on hfq function in Salmonella typhimurium
[J].
Brown, L
;
Elliott, T
.
JOURNAL OF BACTERIOLOGY,
1997, 179 (03)
:656-662

Brown, L
论文数: 0 引用数: 0
h-index: 0
机构:
W VIRGINIA UNIV, HLTH SCI CTR, DEPT MICROBIOL & IMMUNOL, MORGANTOWN, WV 26506 USA W VIRGINIA UNIV, HLTH SCI CTR, DEPT MICROBIOL & IMMUNOL, MORGANTOWN, WV 26506 USA

Elliott, T
论文数: 0 引用数: 0
h-index: 0
机构:
W VIRGINIA UNIV, HLTH SCI CTR, DEPT MICROBIOL & IMMUNOL, MORGANTOWN, WV 26506 USA W VIRGINIA UNIV, HLTH SCI CTR, DEPT MICROBIOL & IMMUNOL, MORGANTOWN, WV 26506 USA
[10]
Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene
[J].
Brown, L
;
Elliott, T
.
JOURNAL OF BACTERIOLOGY,
1996, 178 (13)
:3763-3770

Brown, L
论文数: 0 引用数: 0
h-index: 0
机构:
W VIRGINIA UNIV,HLTH SCI CTR,DEPT MICROBIOL & IMMUNOL,MORGANTOWN,WV 26506 W VIRGINIA UNIV,HLTH SCI CTR,DEPT MICROBIOL & IMMUNOL,MORGANTOWN,WV 26506

Elliott, T
论文数: 0 引用数: 0
h-index: 0
机构:
W VIRGINIA UNIV,HLTH SCI CTR,DEPT MICROBIOL & IMMUNOL,MORGANTOWN,WV 26506 W VIRGINIA UNIV,HLTH SCI CTR,DEPT MICROBIOL & IMMUNOL,MORGANTOWN,WV 26506