Are we stuck in the standards?

被引：7

作者：

Ball, Catherine A. ^{[1
]}

机构：

[1] Stanford Univ, Dept Biochem, Sch Med, Stanford, CA 94305 USA

来源：

NATURE BIOTECHNOLOGY | 2006年 / 24卷 / 11期

关键词：

D O I：

10.1038/nbt1106-1374

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

To avoid duplication of effort, slow adoption and inefficiency in development, those developing biological standards need to communicate more with each other, attract help from experts in the ontology/ standards communities and keep focused on needs of users.

引用

页码：1374 / 1376

页数：3

共 9 条

[1] Gene Ontology: tool for the unification of biology [J].

Ashburner, M ;

Ball, CA ;

Blake, JA ;

Botstein, D ;

Butler, H ;

Cherry, JM ;

Davis, AP ;

Dolinski, K ;

Dwight, SS ;

Eppig, JT ;

Harris, MA ;

Hill, DP ;

Issel-Tarver, L ;

Kasarskis, A ;

Lewis, S ;

Matese, JC ;

Richardson, JE ;

Ringwald, M ;

Rubin, GM ;

Sherlock, G .

NATURE GENETICS, 2000, 25 (01) :25-29

[2] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data [J].

Brazma, A ;

Hingamp, P ;

Quackenbush, J ;

Sherlock, G ;

Spellman, P ;

Stoeckert, C ;

Aach, J ;

Ansorge, W ;

Ball, CA ;

Causton, HC ;

Gaasterland, T ;

Glenisson, P ;

Holstege, FCP ;

Kim, IF ;

Markowitz, V ;

Matese, JC ;

Parkinson, H ;

Robinson, A ;

Sarkans, U ;

Schulze-Kremer, S ;

Stewart, J ;

Taylor, R ;

Vilo, J ;

Vingron, M .

NATURE GENETICS, 2001, 29 (04) :365-371

[3] The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology [J].

Eppig, JT ;

Bult, CJ ;

Kadin, JA ;

Richardson, JE ;

Blake, JA .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D471-D475

[4] FlyBase: anatomical data, images and queries [J].

Grumbling, Gary ;

Strelets, Victor .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D484-D488

[5] The Gene Ontology (GO) database and informatics resource [J].

Harris, MA ;

Clark, J ;

Ireland, A ;

Lomax, J ;

Ashburner, M ;

Foulger, R ;

Eilbeck, K ;

Lewis, S ;

Marshall, B ;

Mungall, C ;

Richter, J ;

Rubin, GM ;

Blake, JA ;

Bult, C ;

Dolan, M ;

Drabkin, H ;

Eppig, JT ;

Hill, DP ;

Ni, L ;

Ringwald, M ;

Balakrishnan, R ;

Cherry, JM ;

Christie, KR ;

Costanzo, MC ;

Dwight, SS ;

Engel, S ;

Fisk, DG ;

Hirschman, JE ;

Hong, EL ;

Nash, RS ;

Sethuraman, A ;

Theesfeld, CL ;

Botstein, D ;

Dolinski, K ;

Feierbach, B ;

Berardini, T ;

Mundodi, S ;

Rhee, SY ;

Apweiler, R ;

Barrell, D ;

Camon, E ;

Dimmer, E ;

Lee, V ;

Chisholm, R ;

Gaudet, P ;

Kibbe, W ;

Kishore, R ;

Schwarz, EM ;

Sternberg, P ;

Gwinn, M .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D258-D261

[6] The HUPOPSI's Molecular Interaction format - a community standard for the representation of protein interaction data [J].

Hermjakob, H ;

Montecchi-Palazzi, L ;

Bader, G ;

Wojcik, R ;

Salwinski, L ;

Ceol, A ;

Moore, S ;

Orchard, S ;

Sarkans, U ;

von Mering, C ;

Roechert, B ;

Poux, S ;

Jung, E ;

Mersch, H ;

Kersey, P ;

Lappe, M ;

Li, YX ;

Zeng, R ;

Rana, D ;

Nikolski, M ;

Husi, H ;

Brun, C ;

Shanker, K ;

Grant, SGN ;

Sander, C ;

Bork, P ;

Zhu, WM ;

Pandey, A ;

Brazma, A ;

Jacq, B ;

Vidal, M ;

Sherman, D ;

Legrain, P ;

Cesareni, G ;

Xenarios, L ;

Eisenberg, D ;

Steipe, B ;

Hogue, C ;

Apweiler, R .

NATURE BIOTECHNOLOGY, 2004, 22 (02) :177-183

[7] Genome Snapshot:: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome [J].

Hirschman, Jodi E. ;

Balakrishnan, Rama ;

Christie, Karen R. ;

Costanzo, Maria C. ;

Dwight, Selina S. ;

Engel, Stacia R. ;

Fisk, Dianna G. ;

Hong, Eurie L. ;

Livstone, Michael S. ;

Nash, Robert ;

Park, Julie ;

Oughtred, Rose ;

Skrzypek, Marek ;

Starr, Barry ;

Theesfeld, Chandra L. ;

Williams, Jennifer ;

Andrada, Rey ;

Binkley, Gail ;

Dong, Qing ;

Lane, Christopher ;

Miyasato, Stuart ;

Sethuraman, Anand ;

Schroeder, Mark ;

Thanawala, Mayank K. ;

Weng, Shuai ;

Dolinski, Kara ;

Botstein, David ;

Cherry, J. Michael .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D442-D445

[8]

Spellman PT, 2002, GENOME BIOL, V3

[9] The MGED Ontology: a resource for semantics-based description of microarray experiments [J].

Whetzel, PL ;

Parkinson, H ;

Causton, HC ;

Fan, LJ ;

Fostel, J ;

Fragoso, G ;

Game, L ;

Heiskanen, M ;

Morrison, N ;

Rocca-Serra, P ;

Sansone, SA ;

Taylor, C ;

White, J ;

Stoeckert, CJ .

BIOINFORMATICS, 2006, 22 (07) :866-873

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