OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results

被引：26

作者：

Barsnes, Harald ^{[1
]}

Huber, Steffen ^{[2
,3
]}

Sickmann, Albert ^{[2
]}

Eidhammer, Ingvar ^{[1
]}

Martens, Lennart ^{[4
]}

机构：

[1] Univ Bergen, Dept Informat, N-5020 Bergen, Norway

[2] ISAS Inst Analyt Sci, Dortmund, Germany

[3] Tech Univ Dresden, Dresden, Germany

[4] EBI, EMBL Outstn, Cambridge, England

来源：

PROTEOMICS | 2009年 / 9卷 / 14期

关键词：

Bioinformatics; OMSSA; Protein identification; PEPTIDE IDENTIFICATIONS; MASS;

D O I：

10.1002/pmic.200900037

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Protein identification by MS is an important technique in both gel-based and gel-free proteome studies. The Open Mass Spectrometry Search Algorithm (OMSSA) (http:// pubchem.ncbi.nlm.nih.gov/omssa) is an open-source search engine that can be used to identify MS/MS spectra acquired in these experiments. We here present a lightweight, open-source Java software library, OMSSA Parser (http://code.google.com/p/omssa-parser), which parses OMSSA omx result files into easy accessible and fully functional object models. In addition, we also provide examples illustrating the usage of our library.

引用

页码：3772 / 3774

页数：3

共 14 条

[11] Qscore: An algorithm for evaluating SEQUEST database search results [J].