What is microbial community ecology?

被引:349
作者
Konopka, Allan [1 ]
机构
[1] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
关键词
microbial community; functional redundancy; microbial interactions; emergent properties; RIBOSOMAL-RNA; BIODIVERSITY; EVOLUTION; DYNAMICS; COMPLEXITY; DIVERSITY; BACTERIA; CONSEQUENCES; DEGRADATION; STABILITY;
D O I
10.1038/ismej.2009.88
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
The activities of complex communities of microbes affect biogeochemical transformations in natural, managed and engineered ecosystems. Meaningfully defining what constitutes a community of interacting microbial populations is not trivial, but is important for rigorous progress in the field. Important elements of research in microbial community ecology include the analysis of functional pathways for nutrient resource and energy flows, mechanistic understanding of interactions between microbial populations and their environment, and the emergent properties of the complex community. Some emergent properties mirror those analyzed by community ecologists who study plants and animals: biological diversity, functional redundancy and system stability. However, because microbes possess mechanisms for the horizontal transfer of genetic information, the metagenome may also be considered as a community property. The ISME Journal (2009) 3, 1223-1230; doi: 10.1038/ismej.2009.88; published online 6 August 2009
引用
收藏
页码:1223 / 1230
页数:8
相关论文
共 72 条
[21]   Messing with bacterial quorum sensing [J].
Gonzalez, Juan E. ;
Keshavan, Neela D. .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2006, 70 (04) :859-+
[22]   GROWTH-KINETICS AND COMPETITION - SOME CONTEMPORARY COMMENTS [J].
GOTTSCHAL, JC .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 1993, 63 (3-4) :299-313
[23]   Resolving Genetic Functions within Microbial Populations: In Situ Analyses Using rRNA and mRNA Stable Isotope Probing Coupled with Single-Cell Raman-Fluorescence In Situ Hybridization [J].
Huang, Wei E. ;
Ferguson, Andrew ;
Singer, Andrew C. ;
Lawson, Kathryn ;
Thompson, Ian P. ;
Kalin, Robert M. ;
Larkin, Michael J. ;
Bailey, Mark J. ;
Whiteley, Andrew S. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (01) :234-241
[24]   CONJUGATIVE PLASMIDS IN BACTERIA OF THE PRE-ANTIBIOTIC ERA [J].
HUGHES, VM ;
DATTA, N .
NATURE, 1983, 302 (5910) :725-726
[25]   Simulating soil C dynamics with EPIC: Model description and testing against long-term data [J].
Izaurralde, RC ;
Williams, JR ;
McGill, WB ;
Rosenberg, NJ ;
Jakas, MCQ .
ECOLOGICAL MODELLING, 2006, 192 (3-4) :362-384
[26]   Big questions, small worlds: microbial model systems in ecology [J].
Jessup, CM ;
Kassen, R ;
Forde, SE ;
Kerr, B ;
Buckling, A ;
Rainey, PB ;
Bohannan, BJM .
TRENDS IN ECOLOGY & EVOLUTION, 2004, 19 (04) :189-197
[27]   Genomic islands: tools of bacterial horizontal gene transfer and evolution [J].
Juhas, Mario ;
van der Meer, Jan Roelof ;
Gaillard, Muriel ;
Harding, Rosalind M. ;
Hood, Derek W. ;
Crook, Derrick W. .
FEMS MICROBIOLOGY REVIEWS, 2009, 33 (02) :376-393
[28]  
Konopka A., 2006, MICROBE, V1, P175
[29]  
Levin S., 1999, Fragile Dominion: Complexity and the Commons
[30]   Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat [J].
Ley, Ruth E. ;
Harris, J. Kirk ;
Wilcox, Joshua ;
Spear, John R. ;
Miller, Scott R. ;
Bebout, Brad M. ;
Maresca, Julia A. ;
Bryant, Donald A. ;
Sogin, Mitchell L. ;
Pace, Norman R. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (05) :3685-3695