Screening for novel enzymes for biocatalytic processes: accessing the metagenome as a resource of novel functional sequence space

被引:151
作者
Lorenz, P [1 ]
Liebeton, K [1 ]
Niehaus, F [1 ]
Eck, J [1 ]
机构
[1] BRAIN Aktiengesell, D-64673 Zwingenberg, Germany
关键词
D O I
10.1016/S0958-1669(02)00345-2
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Historically, biotechnology has missed up to 99% of existing microbial resources by using traditional screening techniques. Strategies of directly cloning 'environmental DNA' comprising the genetic blueprints of entire microbial consortia (the so-called 'metagenome') provide molecular sequence space that along with ingenious in vitro evolution technologies will act synergistically to bring a maximum of available sequence-space into biocatalytic application.
引用
收藏
页码:572 / 577
页数:6
相关论文
共 60 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION [J].
AMANN, RI ;
LUDWIG, W ;
SCHLEIFER, KH .
MICROBIOLOGICAL REVIEWS, 1995, 59 (01) :143-169
[3]  
[Anonymous], 2001, Environmental Molecular Microbiology
[4]   Combinatorial and computational challenges for biocatalyst design [J].
Arnold, FH .
NATURE, 2001, 409 (6817) :253-257
[5]   Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage [J].
Béjà, O ;
Suzuki, MT ;
Koonin, EV ;
Aravind, L ;
Hadd, A ;
Nguyen, LP ;
Villacorta, R ;
Amjadi, M ;
Garrigues, C ;
Jovanovich, SB ;
Feldman, RA ;
DeLong, EF .
ENVIRONMENTAL MICROBIOLOGY, 2000, 2 (05) :516-529
[6]   New natural product families from an environmental DNA (eDNA) gene cluster [J].
Brady, SF ;
Chao, CJ ;
Clardy, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (34) :9968-9969
[7]   Cloning and heterologous expression of a natural product biosynthetic gene cluster from eDNA [J].
Brady, SF ;
Chao, CJ ;
Handelsman, J ;
Clardy, J .
ORGANIC LETTERS, 2001, 3 (13) :1981-1984
[8]   Search and discovery strategies for biotechnology: The paradigm shift [J].
Bull, AT ;
Ward, AC ;
Goodfellow, M .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2000, 64 (03) :573-+
[9]   The search for the ideal biocatalyst [J].
Burton, SG ;
Cowan, DA ;
Woodley, JM .
NATURE BIOTECHNOLOGY, 2002, 20 (01) :37-45
[10]   Rapid characterisation of deep-sea actinomycetes for biotechnology screening programmes [J].
Colquhoun, JA ;
Zulu, J ;
Goodfellow, M ;
Horikoshi, K ;
Ward, AC ;
Bull, AT .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2000, 77 (04) :359-367