Time-dependent density functional theory study of cobalt corrinoids: Electronically excited states of coenzyme B12

被引:21
作者
Andruniow, Tadeusz [1 ,2 ]
Jaworska, Maria [3 ]
Lodowski, Piotr [3 ]
Zgierski, Marek Z. [4 ]
Dreos, Renata
Randaccio, Lucio [5 ]
Kozlowski, Pawel M. [1 ]
机构
[1] Univ Louisville, Dept Chem, Louisville, KY 40292 USA
[2] Wroclaw Univ Technol, Dept Chem, Inst Phys & Theoret Chem, PL-50370 Wroclaw, Poland
[3] Silesian Univ, Inst Chem, PL-40006 Katowice, Poland
[4] Natl Res Council Canada, Steacie Inst Mol Sci, Ottawa, ON K1A 0R6, Canada
[5] Univ Trieste, Dept Chem Sci, Ctr Excellence Biocrystallog, I-34127 Trieste, Italy
关键词
CO-C BOND; PRIMARY PHOTOLYSIS MECHANISM; STEREOELECTRONIC PROPERTIES; GEMINATE RECOMBINATION; RADICAL CATALYSIS; ADENOSYLCOBALAMIN; VITAMIN-B-12; ENERGY; APPROXIMATION; PERFORMANCE;
D O I
10.1063/1.3190326
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The analysis of the electronic spectra of adenosylcobalamin (AdoCbl) and its derivative in which the trans axial base was replaced by a water molecule (AdoCbi-H2O) has been performed by means of time-dependent density functional theory (TDDFT). The latter corresponds to the situation encountered in strongly acidic conditions. The TDDFT electronic transitions and oscillator strengths were calculated at the optimized B3LYP and BP86 ground state equilibrium geometries. A comparison of the orbital energy diagrams obtained with the B3LYP and BP86 functionals reveals a different orbital order and composition of the highest occupied and lowest unoccupied molecular orbitals. In B3LYP the lowest-energy transitions are of pi/d ->pi*, pi/d ->sigma*, and pi/d -> d characters while in the case of BP86 they are mainly d/pi ->pi* and d ->pi*. The long range charge transfer transitions involving excitations from adenine pi orbitals to antibonding corrin pi* orbital can be observed at low energies, especially in BP86 results. Calculated electronic excitations were used to simulate the absorption spectra for a direct comparison with the absorption spectra recorded for AdoCbl at different pH values. As previously found for methylcobalamin [see Andruniow et al., J. Chem. Phys. 129, 085101 (2008)] also for AdoCbl the two-parameter scaling technique is required to obtain a satisfactory agreement between theoretical and experimental spectra. Both functionals correctly predict the shifting of the lowest intense transition toward blue by approximately 13 nm upon changing pH from 7 to 1. (C) 2009 American Institute of Physics. [doi: 10.1063/1.3190326]
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页数:15
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