Evolutionary history of 7SL RNA-derived SINEs in supraprimates

被引:175
作者
Kriegs, Jan Ole
Churakov, Gennady
Jurka, Jerzy
Brosius, Juergen
Schmitz, Juergen
机构
[1] Univ Munster, ZMBE, Inst Expt Pathol, D-48149 Munster, Germany
[2] Genet Informat Res Inst, Mountain View, CA 94043 USA
关键词
D O I
10.1016/j.tig.2007.02.002
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The evolutionary relationships of 7SL RNA-derived SINEs such as the primate Alu or the rodent 131 elements have hitherto been obscure. We established an unambiguous phylogenetic tree for Supraprimates, and derived intraordinal relationships of the 7SL RNA-derived SINEs. As well as new elements in Tupaia and primates, we also found that the purported ancestral fossil AN monomer was restricted to Primates, and provide here the first description of a potential chimeric promoter box region in SINEs.
引用
收藏
页码:158 / 161
页数:4
相关论文
共 25 条
[11]   Parallel adaptive radiations in two major clades of placental mammals [J].
Madsen, O ;
Scally, M ;
Douady, CJ ;
Kao, DJ ;
DeBry, RW ;
Adkins, R ;
Amrine, HM ;
Stanhope, MJ ;
de Jong, WW ;
Springer, MS .
NATURE, 2001, 409 (6820) :610-614
[12]   Resolution of the early placental mammal radiation using Bayesian phylogenetics [J].
Murphy, WJ ;
Eizirik, E ;
O'Brien, SJ ;
Madsen, O ;
Scally, M ;
Douady, CJ ;
Teeling, E ;
Ryder, OA ;
Stanhope, MJ ;
de Jong, WW ;
Springer, MS .
SCIENCE, 2001, 294 (5550) :2348-2351
[13]   Characterization of novel Alu- and tRNA-related SINEs from the tree shrew and evolutionary implications of their origins [J].
Nishihara, H ;
Terai, Y ;
Okada, N .
MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (11) :1964-1972
[14]   Pegasoferae, an unexpected mammalian clade revealed by tracking ancient retroposon insertions [J].
Nishihara, Hidenori ;
Hasegawa, Masarni ;
Okada, Norihiro .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (26) :9929-9934
[15]   A MASTER SEQUENCE RELATED TO A FREE LEFT ALU MONOMER (FLAM) AT THE ORIGIN OF THE B1 FAMILY IN RODENT GENOMES [J].
QUENTIN, Y .
NUCLEIC ACIDS RESEARCH, 1994, 22 (12) :2222-2227
[16]   ORIGIN OF THE ALU FAMILY - A FAMILY OF ALU-LIKE MONOMERS GAVE BIRTH TO THE LEFT AND THE RIGHT ARMS OF THE ALU ELEMENTS [J].
QUENTIN, Y .
NUCLEIC ACIDS RESEARCH, 1992, 20 (13) :3397-3401
[17]   FUSION OF A FREE LEFT ALU MONOMER AND A FREE RIGHT ALU MONOMER AT THE ORIGIN OF THE ALU FAMILY IN THE PRIMATE GENOMES [J].
QUENTIN, Y .
NUCLEIC ACIDS RESEARCH, 1992, 20 (03) :487-493
[18]   The complete mitochondrial genome of Tupaia belangeri and the phylogenetic affiliation of Scandentia to other eutherian orders [J].
Schmitz, J ;
Ohme, M ;
Zischler, H .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (09) :1334-1343
[19]   Human genomic deletions mediated by recombination between Alu elements [J].
Sen, Shurjo K. ;
Han, Kyudong ;
Wang, Jianxin ;
Lee, Jungnam ;
Wang, Hui ;
Callinan, Pauline A. ;
Dyer, Matthew ;
Cordaux, Richard ;
Liang, Ping ;
Batzer, Mark A. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2006, 79 (01) :41-53
[20]   Alu-containing exons are alternatively spliced [J].
Sorek, R ;
Ast, G ;
Graur, D .
GENOME RESEARCH, 2002, 12 (07) :1060-1067