Two-dimensional infrared investigation of N-acetyl tryptophan methyl amide in solution

被引:27
作者
Bagchi, Sayan [1 ]
Kim, Yung Sam [1 ]
Charnley, Adam K. [1 ]
Smith, Amos B., III [1 ]
Hochstrasser, Robin M. [1 ]
机构
[1] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
关键词
VIBRATIONAL CIRCULAR-DICHROISM; POLARIZED VISIBLE RAMAN; I MODE FREQUENCIES; 2D IR; CONFORMATIONAL ISOMERIZATION; FLEXIBLE BIOMOLECULES; COUPLING-CONSTANTS; FTIR-SPECTROSCOPY; HELICAL PEPTIDES; LIQUID WATER;
D O I
10.1021/jp067348m
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The linear infrared and two-dimensional infrared (2D IR) spectra in the amide-I region of N-acetyl tryptophan methyl amide (NATMA) in solvents of varying polarity are reported. The two amide-I transitions have been assigned unambiguously by using C-13 isotopic substitution of the carbonyl group. The amide unit at the amino end shows a lower transition frequency in CH2Cl2 and methanol, while the acetyl end has a lower transition frequency in D2O. Multiple conformers exist in CH2Cl2 and methanol, but only one conformer is evident in D2O. The 2D IR cross peaks from the intermode coupling yield off-diagonal anharmonicities 2.5 +/- 0.5, 3.25 +/- 0.5, and 3.0 +/- 0.5 cm(-1) in CH2Cl2, methanol, and D2O, respectively, which by simple matrix diagonalization yield the coupling constants 8.0 +/- 0.5, 8.0 +/- 1.0, and 5.5 +/- 1.0 cm(-1). The major conformer in CH2Cl2 corresponds to a C-7 structure, in agreement with that found in the gas phase [Dian, B. C.; Longarte, A.; Mercier, S.; Evans, D. A.; Wales, D. J.; Zwier, T. S. J. Chem. Phys. 2002, 117, 10688-10702] with intramolecular hydrogen bonding between the acetyl end CO and the amino end N-H. The backbone dihedral angles (phi, psi) are determined to be in the ranges of (-55 +/- 5 degrees, 30 +/- 5 degrees), (120 +/- 10 degrees, -20 +/- 10 degrees), and (+/- 160 +/- 10 degrees, +/- 75 +/- 10 degrees) in CH2Cl2, methanol, and D2O, respectively.
引用
收藏
页码:3010 / 3018
页数:9
相关论文
共 61 条
[51]   Molden: a pre- and post-processing program for molecular and electronic structures [J].
Schaftenaar, G ;
Noordik, JH .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2000, 14 (02) :123-134
[52]   Structure analysis of dipeptides in water by exploring and utilizing the structural sensitivity of amide III by polarized visible Raman, FTIR-spectroscopy and DFT based normal coordinate analysis [J].
Schweitzer-Stenner, R ;
Eker, F ;
Huang, Q ;
Griebenow, K ;
Mroz, PA ;
Kozlowski, PM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (16) :4294-4304
[53]   Residual native structure in a thermally denatured β-hairpin [J].
Smith, AW ;
Chung, HS ;
Ganim, Z ;
Tokmakoff, A .
JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (36) :17025-17027
[54]   Conformational landscapes in amino acids: infrared and ultraviolet ion-dip spectroscopy of phenylalanine in the gas phase [J].
Snoek, LC ;
Robertson, EG ;
Kroemer, RT ;
Simons, JP .
CHEMICAL PHYSICS LETTERS, 2000, 321 (1-2) :49-56
[55]   ELECTRON DISTRIBUTIONS IN PEPTIDES AND RELATED MOLECULES .1. AN EXPERIMENTAL AND THEORETICAL-STUDY OF N-ACETYL-L-TRYPTOPHAN METHYLAMIDE [J].
SOUHASSOU, M ;
LECOMTE, C ;
BLESSING, RH ;
AUBRY, A ;
ROHMER, MM ;
WIEST, R ;
BENARD, M ;
MARRAUD, M .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1991, 47 :253-266
[56]   Structure of the protected dipeptide Ac-Val-Phe-OMe in the gas phase:: Towards a β-sheet model system [J].
Unterberg, C ;
Gerlach, A ;
Schrader, T ;
Gerhards, M .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (18) :8296-8300
[57]   Local structure of β-hairpin isotopomers by FTIR, 2D IR, and ab initio theory [J].
Wang, JP ;
Chen, JX ;
Hochstrasser, RM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (14) :7545-7555
[58]   Structure determination of trialanine in water using polarization sensitive two-dimensional vibrational spectroscopy [J].
Woutersen, S ;
Hamm, P .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (47) :11316-11320
[59]   Heterodyned two-dimensional infrared spectroscopy of solvent-dependent conformations of acetylproline-NH2 [J].
Zanni, MT ;
Gnanakaran, S ;
Stenger, J ;
Hochstrasser, RM .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (28) :6520-6535
[60]   Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time [J].
Zheng, JR ;
Kwak, K ;
Asbury, J ;
Chen, X ;
Piletic, IR ;
Fayer, MD .
SCIENCE, 2005, 309 (5739) :1338-1343