Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome

被引:420
作者
Supply, P
Mazars, E
Lesjean, S
Vincent, V
Gicquel, B
Locht, C
机构
[1] Inst Pasteur, Lab Mecanismes Mol Pathogenese Bacterienne, INSERM, U447, F-59019 Lille, France
[2] Inst Pasteur, Lab Rech & Dev, F-59019 Lille, France
[3] Inst Pasteur, Lab Reference Mycobacteries, F-75724 Paris, France
[4] Inst Pasteur, Unite Genet Mycobacterienne, F-75724 Paris, France
关键词
D O I
10.1046/j.1365-2958.2000.01905.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mycobacterial interspersed repetitive units (MIRUs) are 40-100 bp DNA elements often found as tandem repeats and dispersed in intergenic regions of the Mycobacterium tuberculosis complex genomes. The M. tuberculosis H37Rv chromosome contains 41 MIRU loci. After polymerase chain reaction (PCR) and sequence analyses of these loci in 31 M. tuberculosis complex strains, 12 of them were found to display variations in tandem repeat copy numbers and, in most cases, sequence variations between repeat units as well. These features are reminiscent of those of certain human variable minisatellites. Of the 12 variable loci, only one was found to vary among genealogically distant BCG substrains, suggesting that these interspersed bacterial minisatellite-like structures evolve slowly in mycobacterial populations.
引用
收藏
页码:762 / 771
页数:10
相关论文
共 45 条
[11]  
Eshleman James R., 1995, Current Opinion in Oncology, V7, P83
[12]   Long, polymorphic microsatellites in simple organisms [J].
Field, D ;
Wills, C .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1996, 263 (1367) :209-215
[13]   Phenotypic and genotypic characterization of Mycobacterium africanum isolates from west Africa [J].
Frothingham, R ;
Strickland, PL ;
Bretzel, G ;
Ramaswamy, S ;
Musser, JM ;
Williams, DL .
JOURNAL OF CLINICAL MICROBIOLOGY, 1999, 37 (06) :1921-1926
[14]   Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats [J].
Frothingham, R ;
Meeker-O'Connell, WA .
MICROBIOLOGY-UK, 1998, 144 :1189-1196
[15]   Identification of variable regions in the genomes of tubercle bacilli using bacterial artificial chromosome arrays [J].
Gordon, SV ;
Brosch, R ;
Billault, A ;
Garnier, T ;
Eiglmeier, K ;
Cole, ST .
MOLECULAR MICROBIOLOGY, 1999, 32 (03) :643-655
[16]   New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv [J].
Gordon, SV ;
Heym, B ;
Parkhill, J ;
Barrell, B ;
Cole, ST .
MICROBIOLOGY-SGM, 1999, 145 :881-892
[17]   CHARACTERIZATION OF A MAJOR POLYMORPHIC TANDEM REPEAT IN MYCOBACTERIUM-TUBERCULOSIS AND ITS POTENTIAL USE IN THE EPIDEMIOLOGY OF MYCOBACTERIUM-KANSASII AND MYCOBACTERIUM-GORDONAE [J].
HERMANS, PWM ;
VANSOOLINGEN, D ;
VANEMBDEN, JDA .
JOURNAL OF BACTERIOLOGY, 1992, 174 (12) :4157-4165
[18]   DNA repeats identify novel virulence genes in Haemophilus influenzae [J].
Hood, DW ;
Deadman, ME ;
Jennings, MP ;
Bisercic, M ;
Fleischmann, RC ;
Venter, JC ;
Moxon, ER .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (20) :11121-11125
[19]  
HOPKINS B, 1994, J FORENSIC SCI, V39, P526
[20]   COMPLEX GENE CONVERSION EVENTS IN GERMLINE MUTATION AT HUMAN MINISATELLITES [J].
JEFFREYS, AJ ;
TAMAKI, K ;
MACLEOD, A ;
MONCKTON, DG ;
NEIL, DL ;
ARMOUR, JAL .
NATURE GENETICS, 1994, 6 (02) :136-145