Intrinsic disorder and functional proteomics

被引:572
作者
Radivojac, Predrag
Iakoucheva, Lilia M.
Oldfield, Christopher J.
Obradovic, Zoran
Uversky, Vladimir N.
Dunker, A. Keith [1 ]
机构
[1] Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46204 USA
[2] Indiana Univ, Sch Informat, Bloomington, IN USA
[3] Rockefeller Univ, Lab Stat Genet, New York, NY 10021 USA
[4] Temple Univ, Ctr Informat Sci & Technol, Philadelphia, PA 19122 USA
[5] Russian Acad Sci, Inst Biol Instrumentat, Pushchino 142292, Moscow, Russia
关键词
D O I
10.1529/biophysj.106.094045
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The recent advances in the prediction of intrinsically disordered proteins and the use of protein disorder prediction in the fields of molecular biology and bioinformatics are reviewed here, especially with regard to protein function. First, a close look is taken at intrinsically disordered proteins and then at the methods used for their experimental characterization. Next, the major statistical properties of disordered regions are summarized, and prediction models developed thus far are described, including their numerous applications in functional proteomics. The future of the prediction of protein disorder and the future uses of such predictions in functional proteomics comprise the last section of this article.
引用
收藏
页码:1439 / 1456
页数:18
相关论文
共 209 条
[1]  
Adams Michael, 2004, Journal of Structural and Functional Genomics, V5, P1, DOI 10.1023/B:JSFG.0000029244.65028.71
[2]   Intrinsic structural disorder and sequence features of the cell cycle inhibitor p57Kip2 [J].
Adkins, JN ;
Lumb, KJ .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 2002, 46 (01) :1-7
[3]  
Adler A J, 1973, Methods Enzymol, V27, P675
[4]   PRINCIPLES THAT GOVERN FOLDING OF PROTEIN CHAINS [J].
ANFINSEN, CB .
SCIENCE, 1973, 181 (4096) :223-230
[5]  
[Anonymous], FOLD DES
[6]   On some general properties of proteins. [J].
Anson, ML ;
Mirsky, AE .
JOURNAL OF GENERAL PHYSIOLOGY, 1925, 9 (02) :169-179
[7]   NMR structure of inactivation gates from mammalian voltage-dependent potassium channels [J].
Antz, C ;
Geyer, M ;
Fakler, B ;
Schott, MK ;
Guy, HR ;
Frank, R ;
Ruppersberg, JP ;
Kalbitzer, HR .
NATURE, 1997, 385 (6613) :272-275
[8]   THE HISTONE FOLD - A UBIQUITOUS ARCHITECTURAL MOTIF UTILIZED IN DNA COMPACTION AND PROTEIN DIMERIZATION [J].
ARENTS, G ;
MOUDRIANAKIS, EN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (24) :11170-11174
[9]   INACTIVATION OF SODIUM CHANNEL .2. GATING CURRENT EXPERIMENTS [J].
ARMSTRONG, CM ;
BEZANILLA, F .
JOURNAL OF GENERAL PHYSIOLOGY, 1977, 70 (05) :567-590
[10]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29