Noncoding RNA of Glutamine Synthetase I Modulates Antibiotic Production in Streptomyces coelicolor A3(2)

被引:34
作者
D'Alia, Davide [1 ]
Nieselt, Kay [2 ]
Steigele, Stephan [2 ]
Mueller, Jonas [2 ]
Verburg, Ilse [1 ]
Takano, Eriko [1 ]
机构
[1] Univ Groningen, Groningen Biomol Sci & Biotechnol Inst, Dept Microbial Physiol, NL-9751 NN Haren, Netherlands
[2] Univ Tubingen, Ctr Bioinformat Tubingen, Dept Informat & Cognit Sci, D-72076 Tubingen, Germany
关键词
HUMAN GENOME; MYCOBACTERIUM-TUBERCULOSIS; STRUCTURED RNAS; VIBRIO-HARVEYI; IDENTIFICATION; GENE; PREDICTION; ENCODES; ABSB;
D O I
10.1128/JB.01374-09
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Overexpression of antisense chromosomal cis-encoded noncoding RNAss (ncRNAs) in glutamine synthetase I resulted in a decrease in growth, protein synthesis, and antibiotic production in Streptomyces coelicolor. In addition, we predicted 3,597 cis-encoded ncRNAs and validated 13 of them experimentally, including several ncRNAs that are differentially expressed in bacterial hormone-defective mutants.
引用
收藏
页码:1160 / 1164
页数:5
相关论文
共 24 条
[1]   Identification of small RNAs in Mycobacterium tuberculosis [J].
Arnvig, Kristine B. ;
Young, Douglas B. .
MOLECULAR MICROBIOLOGY, 2009, 73 (03) :397-408
[2]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[3]   Regulatory mechanisms employed by cis-encoded antisense RNAs [J].
Brantl, Sabine .
CURRENT OPINION IN MICROBIOLOGY, 2007, 10 (02) :102-109
[4]   The absB gene encodes a double strand-specific endoribonuclease that cleaves the read-through transcript of the rpsO-pnp operon in Streptomyces coelicolor [J].
Chang, SA ;
Bralley, P ;
Jones, GH .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (39) :33213-33219
[5]   Non-coding RNAs: Lost in translation? [J].
Costa, Fabricio F. .
GENE, 2007, 386 (1-2) :1-10
[6]   Two transcriptional regulators GlnR and GlnRII are involved in regulation of nitrogen metabolism in Streptomyces coelicolor A3(2) [J].
Fink, D ;
Weissschuh, N ;
Reuther, J ;
Wohlleben, W ;
Engels, A .
MOLECULAR MICROBIOLOGY, 2002, 46 (02) :331-347
[7]   The endonuclease activity of RNase III is required for the regulation of antibiotic production by Streptomyces coelicolor [J].
Gravenbeek, Marcha L. ;
Jones, George H. .
MICROBIOLOGY-SGM, 2008, 154 :3547-3555
[8]   Treatment of Mycobacterium tuberculosis with antisense oligonucleotides to glutamine synthetase mRNA inhibits glutamine synthetase activity, formation of the poly-L-glutamate/glutamine cell wall structure, and bacterial replication [J].
Harth, G ;
Zamecnik, PC ;
Tang, JY ;
Tabatadze, D ;
Horwitz, MA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (01) :418-423
[9]   A three-dimensional view of the molecular machinery of RNA interference [J].
Jinek, Martin ;
Doudna, Jennifer A. .
NATURE, 2009, 457 (7228) :405-412
[10]   The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae [J].
Lenz, DH ;
Mok, KC ;
Lilley, BN ;
Kulkarni, RV ;
Wingreen, NS ;
Bassler, BL .
CELL, 2004, 118 (01) :69-82