Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids

被引:94
作者
Sapay, Nicolas [1 ]
Bennett, W. F. Drew [1 ]
Tieleman, D. Peter [1 ]
机构
[1] Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PARTICLE MESH EWALD; TRANSBILAYER MOVEMENT; UNILAMELLAR VESICLES; PHOSPHOLIPID FLOP; PHASE-TRANSITION; FULL HYDRATION; PORE FORMATION; FREE-ENERGY; MEMBRANES;
D O I
10.1039/b902376c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We have investigated the thermodynamics of phospholipid flip-flop and desorption. Using a series of PC (phosphatidylcholine) lipids with different lengths of acyl tails, and number of unsaturated tails, we calculated potentials of mean force (PMFs) in atomistic molecular dynamics simulations. The PMFs describe the free energy for moving a single lipid molecule from water to the center of the respective lipid bilayer. The free energy to move the lipid from equilibrium to the bilayer center is assumed to be the free energy barrier for lipid flip-flop. We find that the free energy barrier for flip-flop is strongly dependent on the structure of the bilayer; ranging from 16 kJ mol(-1) in the thin DLPC bilayer, to 90 kJ mol(-1) in the DOPC bilayer. There are large deformations in the bilayers' structure, to accommodate the charged PC head group in the bilayer interior. We observe pore formation in all the bilayers, except for POPC and DOPC. The free energy for desorption is equal to the excess chemical potential of the lipid in the bilayer compared to bulk water. The increased chemical potential for PC lipids with longer acyl tails is in qualitative agreement with the critical micelle concentrations. We also determined PMFs for transferring water into the center of the series of lipid bilayers. Water has the same free energy of transfer to the center of all the bilayers, indicating the lipid PMFs differ due to bilayer deformations. Lipid bilayers are soft and deformable, allowing large structural changes, which are dependent on the composition of the bilayer. Our results show that similar PC lipids with only slightly different acyl tails, can have dramatically different thermodynamic behavior.
引用
收藏
页码:3295 / 3302
页数:8
相关论文
共 41 条
[31]   Partitioning of amino acid side chains into lipid bilayers: Results from computer simulations and comparison to experiment [J].
MacCallum, Justin L. ;
Bennett, W. F. Drew ;
Tieleman, D. Peter .
JOURNAL OF GENERAL PHYSIOLOGY, 2007, 129 (05) :371-377
[32]   An antimicrobial peptide, magainin 2, induced rapid flip-flop of phospholipids coupled with pore formation and peptide translocation [J].
Matsuzaki, K ;
Murase, O ;
Fujii, N ;
Miyajima, K .
BIOCHEMISTRY, 1996, 35 (35) :11361-11368
[33]   SETTLE - AN ANALYTICAL VERSION OF THE SHAKE AND RATTLE ALGORITHM FOR RIGID WATER MODELS [J].
MIYAMOTO, S ;
KOLLMAN, PA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1992, 13 (08) :952-962
[34]   Structure of lipid bilayers [J].
Nagle, JF ;
Tristram-Nagle, S .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON BIOMEMBRANES, 2000, 1469 (03) :159-195
[35]   Structural information from multilamellar liposomes at full hydration:: Full q-range fitting with high quality x-ray data [J].
Pabst, G ;
Rappolt, M ;
Amenitsch, H ;
Laggner, P .
PHYSICAL REVIEW E, 2000, 62 (03) :4000-4009
[36]   Area per lipid and acyl length distributions in fluid phosphatidylcholines determined by 2H NMR spectroscopy [J].
Petrache, HI ;
Dodd, SW ;
Brown, MF .
BIOPHYSICAL JOURNAL, 2000, 79 (06) :3172-3192
[37]   Lipids out of equilibrium: Energetics of desorption and pore mediated flip-flop [J].
Tieleman, D. Peter ;
Marrink, Siewert-Jan .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (38) :12462-12467
[38]   GROMACS: Fast, flexible, and free [J].
Van der Spoel, D ;
Lindahl, E ;
Hess, B ;
Groenhof, G ;
Mark, AE ;
Berendsen, HJC .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1701-1718
[39]   Membrane lipids: where they are and how they behave [J].
van Meer, Gerrit ;
Voelker, Dennis R. ;
Feigenson, Gerald W. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2008, 9 (02) :112-124
[40]   EXCHANGE AND FLIP-FLOP OF DIMYRISTOYLPHOSPHATIDYLCHOLINE IN LIQUID-CRYSTALLINE, GEL, AND 2-COMPONENT, 2-PHASE LARGE UNILAMELLAR VESICLES [J].
WIMLEY, WC ;
THOMPSON, TE .
BIOCHEMISTRY, 1990, 29 (05) :1296-1303