Subvoxel Accurate Graph Search Using Non-Euclidean Graph Space

被引:8
作者
Abramoff, Michael D. [1 ,2 ,3 ]
Wu, Xiaodong [4 ]
Lee, Kyungmoo [2 ]
Tang, Li [5 ]
机构
[1] Univ Iowa, Dept Biomed Engn, Dept Ophthalmol & Visual Sci, Stephen A Wynn Inst Vis Res, Iowa City, IA 52242 USA
[2] Univ Iowa, Dept Elect & Comp Engn, Iowa City, IA 52242 USA
[3] Iowa City Vet Adm Med Ctr, Iowa City, IA USA
[4] Univ Iowa, Dept Elect & Comp Engn, Dept Radiat Oncol, Iowa City, IA 52242 USA
[5] Univ Iowa, Dept Ophthalmol & Visual Sci, Iowa City, IA 52242 USA
来源
PLOS ONE | 2014年 / 9卷 / 10期
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
NET SURFACE PROBLEMS; IMAGE SEGMENTATION; ENERGY MINIMIZATION; FLOW; CUTS; OCT;
D O I
10.1371/journal.pone.0107763
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Graph search is attractive for the quantitative analysis of volumetric medical images, and especially for layered tissues, because it allows globally optimal solutions in low-order polynomial time. However, because nodes of graphs typically encode evenly distributed voxels of the volume with arcs connecting orthogonally sampled voxels in Euclidean space, segmentation cannot achieve greater precision than a single unit, i.e. the distance between two adjoining nodes, and partial volume effects are ignored. We generalize the graph to non-Euclidean space by allowing non-equidistant spacing between nodes, so that subvoxel accurate segmentation is achievable. Because the number of nodes and edges in the graph remains the same, running time and memory use are similar, while all the advantages of graph search, including global optimality and computational efficiency, are retained. A deformation field calculated from the volume data adaptively changes regional node density so that node density varies with the inverse of the expected cost. We validated our approach using optical coherence tomography (OCT) images of the retina and 3-D MR of the arterial wall, and achieved statistically significant increased accuracy. Our approach allows improved accuracy in volume data acquired with the same hardware, and also, preserved accuracy with lower resolution, more cost-effective, image acquisition equipment. The method is not limited to any specific imaging modality and readily extensible to higher dimensions.
引用
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页数:13
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