Mismatch repair-driven mutational bias in D. melanogaster

被引:40
作者
Harr, B [1 ]
Todorova, J [1 ]
Schlötterer, C [1 ]
机构
[1] Vet Med Univ Wien, Inst Tierzucht & Genet, A-1210 Vienna, Austria
基金
奥地利科学基金会;
关键词
D O I
10.1016/S1097-2765(02)00575-0
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have used microsatellite sequences to evaluate the influence of the mismatch repair system on mutation bias in D. melanogaster. While mismatch-proficient cells have the highest mutation rate at (GT)(n) repeats, (AT), repeats were the least stable ones in spe/1(-)/(-) flies lacking functional mismatch repair. Furthermore, the mutation spectrum of long microsatellite alleles in spel1(-)/(-) was slightly upward biased, resulting in a gain of repeats, whereas wild-type flies have a strong downward bias. Interestingly, this mismatch repair-mediated downward mutation bias is reflected in the genome composition of D. melanogaster. When compared to other species, D. melanogaster has significantly shorter microsatellites. Our results suggest that the mismatch repair system may have an important role in shaping genome composition.
引用
收藏
页码:199 / 205
页数:7
相关论文
共 33 条
[11]   MICROSATELLITE VARIATION IN NORTH-AMERICAN POPULATIONS OF DROSOPHILA-MELANOGASTER [J].
GOLDSTEIN, DB ;
CLARK, AG .
NUCLEIC ACIDS RESEARCH, 1995, 23 (19) :3882-3886
[12]  
Harr B, 2000, GENETICS, V155, P1213
[13]   Differential distribution of simple sequence repeats in eukaryotic genome sequences [J].
Katti, MV ;
Ranjekar, PK ;
Gupta, VS .
MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (07) :1161-1167
[14]  
KIMURA M, 1969, GENETICS, V61, P763
[15]   Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations [J].
Kruglyak, S ;
Durrett, RT ;
Schug, MD ;
Aquadro, CF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (18) :10774-10778
[16]   Recognition of DNA alterations by the mismatch repair system [J].
Marra, G ;
Schär, P .
BIOCHEMICAL JOURNAL, 1999, 338 :1-13
[17]   Domain-level differences in microsatellite distribution and content result from different relative rates of insertion and deletion mutations [J].
Metzgar, D ;
Liu, L ;
Hansen, C ;
Dybvig, K ;
Wills, C .
GENOME RESEARCH, 2002, 12 (03) :408-413
[18]   A SIMPLE SALTING OUT PROCEDURE FOR EXTRACTING DNA FROM HUMAN NUCLEATED CELLS [J].
MILLER, SA ;
DYKES, DD ;
POLESKY, HF .
NUCLEIC ACIDS RESEARCH, 1988, 16 (03) :1215-1215
[19]   THE DESOXYRIBONUCLEIC ACID CONTENT OF ANIMAL CELLS AND ITS EVOLUTIONARY SIGNIFICANCE [J].
MIRSKY, AE ;
RIS, H .
JOURNAL OF GENERAL PHYSIOLOGY, 1951, 34 (04) :451-462
[20]   Mismatch repair in replication fidelity, genetic recombination, and cancer biology [J].
Modrich, P ;
Lahue, R .
ANNUAL REVIEW OF BIOCHEMISTRY, 1996, 65 :101-133