Relationship between morphological taxonomy and molecular divergence within Crustacea:: Proposal of a molecular threshold to help species delimitation

被引:425
作者
Lefebure, T.
Douady, C. J.
Gouy, M.
Gibert, J.
机构
[1] Cornell Univ, Baker Inst, Ithaca, NY 14853 USA
[2] Univ Lyon 1, CNRS, UMR 5023, Lab Ecol Hydrosyst Fluviaux, F-69622 Villeurbanne, France
[3] Univ Lyon 1, CNRS, UMR 5558, Lab Biometrie & Biol Evolut, F-69622 Villeurbanne, France
关键词
DNA taxonomy; DNA barcoding; COI; 16S; Crustacea; cryptic species;
D O I
10.1016/j.ympev.2006.03.014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
With todays technology for production of molecular sequences, DNA taxonomy and barcoding arose as a new tool for evolutionary biology and ecology. However, their validities still need to be empirically evaluated. Of most importance is the strength of the correlation between morphological taxonomy and molecular divergence and the possibility to define some molecular thresholds. Here, we report measurements of this correlation for two mitochondrial genes (COI and 16S rRNA) within the sub-phylum Crustacea. Perl scripts were developed to ensure objectivity, reproducibility, and exhaustiveness of our tests. Our analysis reveals a general correlation between molecular divergence and taxonomy. This correlation is particularly high for shallow taxonomic levels allowing us to propose a COI universal crustacean threshold to help species delimitation. At higher taxonomic levels this correlation decreases, particularly when comparing different families. Those results plead for DNA use in taxonomy and suggest an operational method to help crustacean species delimitation that is linked to the phylogenetic species definition. This pragmatic tool is expected to fine tune the present classification, and not, as some would have believed, to tear it apart. (c) 2006 Elsevier Inc. All rights reserved.
引用
收藏
页码:435 / 447
页数:13
相关论文
共 60 条
[1]   The impact of species concept on biodiversity studies [J].
Agapow, PM ;
Bininda-Emonds, ORP ;
Crandall, KA ;
Gittleman, JL ;
Mace, GM ;
Marshall, JC ;
Purvis, A .
QUARTERLY REVIEW OF BIOLOGY, 2004, 79 (02) :161-179
[2]   Species realities and numbers in sexual vertebrates: Perspectives from an asexually transmitted genome [J].
Avise, JC ;
Walker, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (03) :992-995
[3]   Proposal for a standardized temporal scheme of biological classification for extant species [J].
Avise, JC ;
Johns, GC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (13) :7358-7363
[4]   Defining operational taxonomic units using DNA barcode data [J].
Blaxter, M ;
Mann, J ;
Chapman, T ;
Thomas, F ;
Whitton, C ;
Floyd, R ;
Abebe, E .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1935-1943
[5]   The promise of a DNA taxonomy [J].
Blaxter, ML .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2004, 359 (1444) :669-679
[6]   NUCLEAR AND MITOCHONDRIAL GENE GENEALOGIES AND ALLOZYME POLYMORPHISM ACROSS A MAJOR PHYLOGEOGRAPHIC BREAK IN THE COPEPOD TIGRIOPUS-CALIFORNICUS [J].
BURTON, RS ;
LEE, BN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (11) :5197-5201
[7]   Land plants and DNA barcodes: short-term and long-term goals [J].
Chase, MW ;
Salamin, N ;
Wilkinson, M ;
Dunwell, JM ;
Kesanakurthi, RP ;
Haider, N ;
Savolainen, V .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1889-1895
[8]  
Claridge M.F., 1997, SPECIES UNITS BIODIV
[9]   Molecular and morphometric data demonstrate the presence of cryptic lineages among freshwater crabs (Decapoda: Potamonautidae: Potamonautes) from the Drakensberg Mountains, South Africa [J].
Daniels, SR ;
Gouws, G ;
Stewart, BA ;
Coke, M .
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 2003, 78 (01) :129-147
[10]   Huxley's line demarcates extensive genetic divergence between eastern and western forms of the giant freshwater prawn, Macrobrachium rosenbergii [J].
de Bruyn, M ;
Wilson, JA ;
Mather, PB .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2004, 30 (01) :251-257