A simple model of DNA denaturation and mutually avoiding walks statistics

被引:5
作者
Baiesi, M [1 ]
Carlon, E
Orlandini, E
Stella, AL
机构
[1] Univ Padua, Dipartimento Fis, INFM, I-35131 Padua, Italy
[2] Univ Saarland, D-66041 Saarbrucken, Germany
关键词
D O I
10.1140/epjb/e2002-00270-2
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
Recently Garel,Monthus and Orland [Europhys. Lett. 55, 132 (2001)] considered a model of DNA denaturation in which excluded volume effects within each strand are neglected, while mutual avoidance is included. Using an approximate scheme they found a first order denaturation. We show that a first order transition for this model follows from exact results for the statistics of two mutually avoiding random walks, whose reunion exponent is c > 2, both in two and three dimensions. Analytical estimates of c due to the interactions with other denaturated loops, as well as numerical calculations, indicate that the transition is even sharper than in models where excluded volume effects are fully incorporated. The probability distribution of distances between homologous base pairs decays as a power law at the transition.
引用
收藏
页码:129 / 134
页数:6
相关论文
共 24 条
[1]   Scaling in DNA unzipping models: Denaturated loops and end segments as branches of a block copolymer network [J].
Baiesi, M ;
Carlon, E ;
Stella, AL .
PHYSICAL REVIEW E, 2002, 66 (02)
[2]   Comment on "a simple model for DNA denaturation" by T. Garel, C. Monthus and H. Orland [J].
Bhattacharjee, SM .
EUROPHYSICS LETTERS, 2002, 57 (05) :772-773
[3]   Roles of stiffness and excluded volume in DNA denaturation [J].
Carlon, E ;
Orlandini, E ;
Stella, AL .
PHYSICAL REVIEW LETTERS, 2002, 88 (19) :4-198101
[4]   Simple model for the DNA denaturation transition [J].
Causo, MS ;
Coluzzi, B ;
Grassberger, P .
PHYSICAL REVIEW E, 2000, 62 (03) :3958-3973
[5]  
de Gennes P.G., 1979, SCALING CONCEPTS POL
[6]   Two-dimensional copolymers and exact conformal multifractality [J].
Duplantier, B .
PHYSICAL REVIEW LETTERS, 1999, 82 (05) :880-883
[8]   INTERSECTIONS OF RANDOM-WALKS - A DIRECT RENORMALIZATION APPROACH [J].
DUPLANTIER, B .
COMMUNICATIONS IN MATHEMATICAL PHYSICS, 1988, 117 (02) :279-329
[9]   CONFORMAL-INVARIANCE AND INTERSECTIONS OF RANDOM-WALKS [J].
DUPLANTIER, B ;
KWON, KH .
PHYSICAL REVIEW LETTERS, 1988, 61 (22) :2514-2517
[10]   EFFECT OF EXCLUDED VOLUME ON PHASE TRANSITIONS IN BIOPOLYMERS [J].
FISHER, ME .
JOURNAL OF CHEMICAL PHYSICS, 1966, 45 (05) :1469-&