The Signal Recognition Particle Database (SRPDB)

被引:9
作者
Zwieb, C [1 ]
Larsen, N [1 ]
机构
[1] MICHIGAN STATE UNIV,DEPT MICROBIOL,E LANSING,MI 48824
关键词
D O I
10.1093/nar/25.1.107
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The SRPDB (Signal Recognition Particle Database) offers aligned SRP RNA and SRP protein sequences, phylogenetically ordered and annotated, This release adds three SRP RNA sequences (totaling 96 SRP RNA sequences) and 11 SRP protein sequences (a total of 39 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72), Also downloadable are sample SRP RNA secondary structure diagrams, a three-dimensional model of the human SRP RNA, search motifs and software.
引用
收藏
页码:107 / 108
页数:2
相关论文
共 14 条
[1]  
BAIROCH A, 1996, NUCLEIC ACIDS RES, V1, P189
[2]   GenBank [J].
Benson, DA ;
Boguski, M ;
Lipman, DJ ;
Ostell, J .
NUCLEIC ACIDS RESEARCH, 1996, 24 (01) :1-5
[3]   SUBUNITS OF THE SACCHAROMYCES-CEREVISIAE SIGNAL RECOGNITION PARTICLE REQUIRED FOR ITS FUNCTIONAL EXPRESSION [J].
BROWN, JD ;
HANN, BC ;
MEDZIHRADSZKY, KF ;
NIWA, M ;
BURLINGAME, AL ;
WALTER, P .
EMBO JOURNAL, 1994, 13 (18) :4390-4400
[4]   Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii [J].
Bult, CJ ;
White, O ;
Olsen, GJ ;
Zhou, LX ;
Fleischmann, RD ;
Sutton, GG ;
Blake, JA ;
FitzGerald, LM ;
Clayton, RA ;
Gocayne, JD ;
Kerlavage, AR ;
Dougherty, BA ;
Tomb, JF ;
Adams, MD ;
Reich, CI ;
Overbeek, R ;
Kirkness, EF ;
Weinstock, KG ;
Merrick, JM ;
Glodek, A ;
Scott, JL ;
Geoghagen, NSM ;
Weidman, JF ;
Fuhrmann, JL ;
Nguyen, D ;
Utterback, TR ;
Kelley, JM ;
Peterson, JD ;
Sadow, PW ;
Hanna, MC ;
Cotton, MD ;
Roberts, KM ;
Hurst, MA ;
Kaine, BP ;
Borodovsky, M ;
Klenk, HP ;
Fraser, CM ;
Smith, HO ;
Woese, CR ;
Venter, JC .
SCIENCE, 1996, 273 (5278) :1058-1073
[5]   SRP-RNA SEQUENCE ALIGNMENT AND SECONDARY STRUCTURE [J].
LARSEN, N ;
ZWIEB, C .
NUCLEIC ACIDS RESEARCH, 1991, 19 (02) :209-215
[6]   ISOLATION AND CHARACTERIZATION OF A CDNA CLONE ENCODING THE 19-KDA PROTEIN OF SIGNAL RECOGNITION PARTICLE (SRP) - EXPRESSION AND BINDING TO 7SL RNA [J].
LINGELBACH, K ;
ZWIEB, C ;
WEBB, JR ;
MARSHALLSAY, C ;
HOBEN, PJ ;
WALTER, P ;
DOBBERSTEIN, B .
NUCLEIC ACIDS RESEARCH, 1988, 16 (20) :9431-9442
[7]   The Ribosomal Database Project (RDP) [J].
Maidak, BL ;
Olsen, GJ ;
Larsen, N ;
Overbeek, R ;
McCaughey, MJ ;
Woese, CR .
NUCLEIC ACIDS RESEARCH, 1996, 24 (01) :82-85
[8]   SMALL CYTOPLASMIC RNA (SCRNA) GENE FROM CLOSTRIDIUM-PERFRINGENS CAN REPLACE THE GENE FOR THE BACILLUS-SUBTILIS SCRNA IN BOTH GROWTH AND SPORULATION [J].
NAKAMURA, K ;
HASHIZUME, E ;
SHIBATA, T ;
NAKAMURA, Y ;
MALA, S ;
YAMANE, K .
MICROBIOLOGY-SGM, 1995, 141 :2965-2975
[9]  
OVERBEEK R, 1993, ANLMCSTM143
[10]  
RODRIGUEZTOME, 1996, NUCLEIC ACIDS RES, V24, P6