Long Noncoding RNA and Epigenetic Regulation

被引:4
作者
Chen Yu-Ning [1 ,2 ,3 ]
Xiong Xing-Dong [1 ,2 ,3 ]
机构
[1] Guangdong Med Coll, Inst Aging Res, Dongguan 523808, Peoples R China
[2] Guangdong Med Coll, Inst Biochem & Mol Biol, Zhanjiang 524023, Peoples R China
[3] Guangdong Prov Key Lab Med Mol Diagnost, Dongguan 523808, Peoples R China
基金
中国国家自然科学基金;
关键词
lncRNA; epigenetic regulation; DNA methylation; histone modification; chromatin remodeling; DIFFERENTIALLY METHYLATED REGION; X-CHROMOSOME INACTIVATION; COMPETING ENDOGENOUS RNA; GENE-EXPRESSION; CPG ISLAND; HISTONE MODIFICATION; TRANSCRIPTION; CHROMATIN; CLUSTER; CANCER;
D O I
10.3724/SP.J.1206.2014.00024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
There is a growing interest for epigenetics in recent years. The main patterns of epigenetic regulation include DNA methylation, histone modification and chromatin remodeling, etc. The outcome of ENCODE project and subsequent studies have revealed that only a small portion of human genome encodes proteins, while the vast majority are transcribed as non-coding RNA (ncRNA). Long non-coding RNA (lncRNA) is commonly defined as an RNA molecule which is larger than 200 nucleotides (nt) and not translated into proteins. Growing evidences have suggested that lncRNAs can regulate gene expression at various levels including epigenetic regulation, transcriptional regulation and post-transcriptional regulation, and are involved in a wide variety of biological processes, such as cell proliferation, differentiation and apoptosis. In this review, we highlight the recent advances of how lncRNAs function in the epigenetic regulation.
引用
收藏
页码:723 / 730
页数:8
相关论文
共 73 条
[1]
Long non-coding RNAs and their implications in cancer epigenetics [J].
Beckedorff, Felipe C. ;
Amaral, Murilo Sena ;
Deocesano-Pereira, Carlos ;
Verjovski-Almeida, Sergio .
BIOSCIENCE REPORTS, 2013, 33 :667-675
[2]
The Intronic Long Noncoding RNA ANRASSF1 Recruits PRC2 to the RASSF1A Promoter, Reducing the Expression of RASSF1A and Increasing Cell Proliferation [J].
Beckedorff, Felipe C. ;
Ayupe, Ana C. ;
Crocci-Souza, Renan ;
Amaral, Murilo S. ;
Nakaya, Helder I. ;
Soltys, Daniela T. ;
Menck, Carlos F. M. ;
Reis, Eduardo M. ;
Verjovski-Almeida, Sergio .
PLOS GENETICS, 2013, 9 (08)
[3]
A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy [J].
Cabianca, Daphne S. ;
Casa, Valentina ;
Bodega, Beatrice ;
Xynos, Alexandros ;
Ginelli, Enrico ;
Tanaka, Yujiro ;
Gabellini, Davide .
CELL, 2012, 149 (04) :819-831
[4]
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA [J].
Cesana, Marcella ;
Cacchiarelli, Davide ;
Legnini, Ivano ;
Santini, Tiziana ;
Sthandier, Olga ;
Chinappi, Mauro ;
Tramontano, Anna ;
Bozzoni, Irene .
CELL, 2011, 147 (02) :358-369
[5]
Decoding the function of nuclear long non-coding RNAs [J].
Chen, Ling-Ling ;
Carmichael, Gordon G. .
CURRENT OPINION IN CELL BIOLOGY, 2010, 22 (03) :357-364
[6]
Altered Nuclear Retention of mRNAs Containing Inverted Repeats in Human Embryonic Stem Cells: Functional Role of a Nuclear Noncoding RNA [J].
Chen, Ling-Ling ;
Carmichael, Gordon G. .
MOLECULAR CELL, 2009, 35 (04) :467-478
[7]
Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals [J].
Costanzi, C ;
Pehrson, JR .
NATURE, 1998, 393 (6685) :599-601
[8]
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression [J].
Derrien, Thomas ;
Johnson, Rory ;
Bussotti, Giovanni ;
Tanzer, Andrea ;
Djebali, Sarah ;
Tilgner, Hagen ;
Guernec, Gregory ;
Martin, David ;
Merkel, Angelika ;
Knowles, David G. ;
Lagarde, Julien ;
Veeravalli, Lavanya ;
Ruan, Xiaoan ;
Ruan, Yijun ;
Lassmann, Timo ;
Carninci, Piero ;
Brown, James B. ;
Lipovich, Leonard ;
Gonzalez, Jose M. ;
Thomas, Mark ;
Davis, Carrie A. ;
Shiekhattar, Ramin ;
Gingeras, Thomas R. ;
Hubbard, Tim J. ;
Notredame, Cedric ;
Harrow, Jennifer ;
Guigo, Roderic .
GENOME RESEARCH, 2012, 22 (09) :1775-1789
[9]
Landscape of transcription in human cells [J].
Djebali, Sarah ;
Davis, Carrie A. ;
Merkel, Angelika ;
Dobin, Alex ;
Lassmann, Timo ;
Mortazavi, Ali ;
Tanzer, Andrea ;
Lagarde, Julien ;
Lin, Wei ;
Schlesinger, Felix ;
Xue, Chenghai ;
Marinov, Georgi K. ;
Khatun, Jainab ;
Williams, Brian A. ;
Zaleski, Chris ;
Rozowsky, Joel ;
Roeder, Maik ;
Kokocinski, Felix ;
Abdelhamid, Rehab F. ;
Alioto, Tyler ;
Antoshechkin, Igor ;
Baer, Michael T. ;
Bar, Nadav S. ;
Batut, Philippe ;
Bell, Kimberly ;
Bell, Ian ;
Chakrabortty, Sudipto ;
Chen, Xian ;
Chrast, Jacqueline ;
Curado, Joao ;
Derrien, Thomas ;
Drenkow, Jorg ;
Dumais, Erica ;
Dumais, Jacqueline ;
Duttagupta, Radha ;
Falconnet, Emilie ;
Fastuca, Meagan ;
Fejes-Toth, Kata ;
Ferreira, Pedro ;
Foissac, Sylvain ;
Fullwood, Melissa J. ;
Gao, Hui ;
Gonzalez, David ;
Gordon, Assaf ;
Gunawardena, Harsha ;
Howald, Cedric ;
Jha, Sonali ;
Johnson, Rory ;
Kapranov, Philipp ;
King, Brandon .
NATURE, 2012, 489 (7414) :101-108
[10]
FORUM: Genomics ENCODE explained [J].
Ecker, Joseph R. .
NATURE, 2012, 489 (7414) :52-53