Multiple DNA binding modes of a metallointercalator revealed by DNA film voltammetry

Binding and the redox reaction of the metallointercalator Ru(bpy)(2)(dppz)(2+) (bpy = 2,2'-bipyridine, dppz dipyrido[3,2- a:2',3'-c]phenazine) with DNA was investigated by DNA film voltammetry. Calf-thymus DNA (CT-DNA) was assembled on a tin-doped indium oxide electrode by layer-by-layer electrostatic adsorption. Voltammetry of Ru(bpy)(2)(dppz)(2+) (Ru-dppz) bound to the DNA film was measured in a redox-free electrolyte and showed strong dependence on the concentration of the metallointercalator. At low Ru-dppz concentrations, a single oxidation peak was observed, the potential of which shifted from 1.25 to 1.1 V with increasing Ru-dppz concentration (peak 1). At high metal chelate concentrations, an additional oxidation peak emerged with a potential of 1.25 V which was unaffected by the Ru- dppz concentration (peak 2). Three experiments were performed to investigate the mechanism and structural basis of the multiple peaks. First, voltammetry of Os(bpy)(2)(dppz)(2+) bound to the CT-DNA film displayed only one peak at its oxidation potential of about 0.75 V. Second, the concentration dependence of Ru-dppz bound to a poly-(AU) film (which does not contain any guanine bases) exhibited only one oxidation peak at about 1.22 V that was independent of the Ru-dppz concentration. Third, when the guanine concentration in a mixed film of CT-DNA and poly-(AU) was changed and the bound Ru-dppz was kept constant, a pre-peak emerged and shifted to 1.1 V with increasing guanines. Based on these results, the appearance of two peaks in the voltammetric measurements of CT-DNA was rationalized by invoking two different DNA binding modes for the Ru-dppz complex: intercalation and electrostatic association. Peak 2 arises from slow oxidation of guanines catalyzed by Ru-dppz electrostatically associated with the DNA film, since the addition of Mg2+ decreases the magnitude of peak 2. Peak 1 was not affected by Mg2+ ions, leading us to conclude that it is due to intercalated Ru- dppz. The intercalation positions the metal complex in close contact with the guanines inside DNA resulting in fast electrocatalytic reaction, giving rise to a catalytic pre-peak.