Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

被引：88

作者：

Sabater-Muñoz, B

Legeai, F

Rispe, C

Bonhomme, J

Dearden, P

Dossat, C

Duclert, A

Gauthier, JP

Ducray, DG

Hunter, W

Dang, P

Kambhampati, S

Martinez-Torres, D

Cortes, T

Moya, A

Nakabachi, A

Philippe, C

Prunier-Leterme, N

Rahbé, Y

Simon, JC

Stern, DL

Wincker, P

Tagu, D

机构：

[1] INRA Rennes, UMR INRA, F-35653 Le Rheu, France

[2] INRA, URGI Genoplante Info, Infobiogen, F-91000 Evry, France

[3] Univ Otago, Dept Biochem, Dunedin, New Zealand

[4] GENOSCOPE, F-91000 Evry, France

[5] Ctr Natl Sequencage, CNRS, UMR 8030, F-91000 Evry, France

[6] ARS, USDA, US Hort Res Lab, Ft Pierce, FL 34945 USA

[7] Kansas State Univ, Dept Entomol, Manhattan, KS 66506 USA

[8] Univ Valencia, ICBIBE, Valencia 46071, Spain

[9] RIKEN, Environm Mol Biol Lab, Wako, Saitama 3510198, Japan

[10] Inst Natl Sci Appl, UMR INRA INSA BF2I, F-69621 Villeurbanne, France

[11] Princeton Univ, Dept Ecol & Evolut Biol, Princeton, NJ 08544 USA

来源：

GENOME BIOLOGY | 2006年 / 7卷 / 03期

关键词：

D O I：

10.1186/gb-2006-7-3-r21

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Aphids are the leading pests in agricultural crops. A large-scale sequencing of 40,904 ESTs from the pea aphid Acyrthosiphon pisum was carried out to define a catalog of 12,082 unique transcripts. A strong AT bias was found, indicating a compositional shift between Drosophila melanogaster and A. pisum. An in silico profiling analysis characterized 135 transcripts specific to pea-aphid tissues ( relating to bacteriocytes and parthenogenetic embryos). This project is the first to address the genetics of the Hemiptera and of a hemimetabolous insect.

引用

页数：11

共 38 条

[1] AKASHI H, 1994, GENETICS, V136, P927
[2] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[3] [Anonymous], 1998, APHID ECOLOGY OPTIMI
[4] Evidence for multiple origins of identical insecticide resistance mutations in the aphid Myzus persicae
Anstead, JA
Williamson, MS
Denholm, I
[J]. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2005, 35 (03) : 249 - 256
[5] Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing
Artiguenave, F
Wincker, P
Brottier, P
Duprat, S
Jovelin, F
Scarpelli, C
Verdier, J
Vico, V
Weissenbach, J
Saurin, W
[J]. FEBS LETTERS, 2000, 487 (01) : 13 - 16
[6] The universal protein resource (UniProt)
Bairoch, A
Apweiler, R
Wu, CH
Barker, WC
Boeckmann, B
Ferro, S
Gasteiger, E
Huang, HZ
Lopez, R
Magrane, M
Martin, MJ
Natale, DA
O'Donovan, C
Redaschi, N
Yeh, LSL
[J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D154 - D159
[7] GENETICS, PHYSIOLOGY, AND EVOLUTIONARY RELATIONSHIPS OF THE GENUS BUCHNERA - INTRACELLULAR SYMBIONTS OF APHIDS
BAUMANN, P
BAUMANN, L
LAI, CY
ROUBAKHSH, D
MORAN, NA
CLARK, MA
[J]. ANNUAL REVIEW OF MICROBIOLOGY, 1995, 49 : 55 - 94
[8] Besansky N.J., 1993, Insect Molecular Biology, V1, P171, DOI 10.1111/j.1365-2583.1993.tb00089.x
[9] Genetic variation for an aphid wing polyphenism is genetically linked to a naturally occurring wing polymorphism
Braendle, C
Friebe, I
Caillaud, MC
Stern, DL
[J]. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1563) : 657 - 664
[10] The gene ontology annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
Camon, E
Magrane, M
Barrell, D
Binns, D
Fleischmann, W
Kersey, P
Mulder, N
Oinn, T
Maslen, J
Cox, A
Apweiler, R
[J]. GENOME RESEARCH, 2003, 13 (04) : 662 - 672

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