Crystal structure of TB-RBP, a novel RNA-binding and regulating protein

被引:25
作者
Pascal, JM
Hart, PJ
Hecht, NB
Robertus, JD [1 ]
机构
[1] Univ Texas, Inst Mol & Cellular Biol, Austin, TX 78712 USA
[2] Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
[3] Univ Texas, Hlth Sci Ctr, Dept Biochem, San Antonio, TX 78229 USA
[4] Univ Penn, Sch Med, Ctr Res Reprod & Womens Hlth, Philadelphia, PA 19104 USA
[5] Univ Penn, Sch Med, Dept Obstet & Gynecol, Philadelphia, PA 19104 USA
关键词
X-ray structure; novel fold; RNA-binding protein; mRNA expression control;
D O I
10.1016/S0022-2836(02)00364-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The testis /brain-RNA-binding protein (TB-RBP) spatially and temporally controls the expression of specific mRNAs in developing male germ cells and brain cells, and is implicated in DNA recombination and repair We report the 2.65 Angstrom crystal structure of mouse TB-RBP. The structure is predominantly alpha-helical and exhibits a novel protein fold and mode of assembly. Crystal symmetry and molecular symmetry combine to form an octet of TB-RBP monomers in the shape of an elongated spherical particle with a large cavity at its center. Amino acid residues that affect RNA and DNA binding are located on the interior surface of the assembled particle, and a putative nucleotide-binding domain that controls RNA binding is located at a dimer interface. Other modes of assembly are suggested for TB-RBP based on our structure and recently reported electron microscopic reconstructions of human TB-RBP. (C) 2002 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:1049 / 1057
页数:9
相关论文
共 31 条
[1]   The DNA binding activity of Translin is mediated by a basic region in the ring-shaped structure conserved in evolution [J].
Aoki, K ;
Suzuki, K ;
Ishida, R ;
Kasai, M .
FEBS LETTERS, 1999, 443 (03) :363-366
[2]   Isolation and characterization of a cDNA encoding a Translin-like protein, TRAX [J].
Aoki, K ;
Ishida, R ;
Kasai, M .
FEBS LETTERS, 1997, 401 (2-3) :109-112
[3]   A NOVEL GENE, TRANSLIN, ENCODES A RECOMBINATION HOTSPOT BINDING-PROTEIN ASSOCIATED WITH CHROMOSOMAL TRANSLOCATIONS [J].
AOKI, K ;
SUZUKI, K ;
SUGANO, T ;
TASAKA, T ;
NAKAHARA, K ;
KUGE, O ;
OMORI, A ;
KASAI, M .
NATURE GENETICS, 1995, 10 (02) :167-174
[4]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[5]   ALSCRIPT - A TOOL TO FORMAT MULTIPLE SEQUENCE ALIGNMENTS [J].
BARTON, GJ .
PROTEIN ENGINEERING, 1993, 6 (01) :37-40
[6]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[7]   Trax (Translin-associated factor X), a primarily cytoplasmic protein, inhibits the binding of TB-RBP (Translin) to RNA [J].
Chennathukuzhi, VM ;
Kurihara, Y ;
Bray, JD ;
Hecht, NB .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (16) :13256-13263
[8]   Altering the GTP binding site of the DNA/RNA-binding protein, Translin/TB-RBP, decreases RNA binding and may create a dominant negative phenotype [J].
Chennathukuzhi, VM ;
Kurihara, Y ;
Bray, JD ;
Yang, JX ;
Hecht, NB .
NUCLEIC ACIDS RESEARCH, 2001, 29 (21) :4433-4440
[9]   VERIFICATION OF PROTEIN STRUCTURES - PATTERNS OF NONBONDED ATOMIC INTERACTIONS [J].
COLOVOS, C ;
YEATES, TO .
PROTEIN SCIENCE, 1993, 2 (09) :1511-1519
[10]   Further additions to MolScript version 1.4, including reading and contouring of electron-density maps [J].
Esnouf, RM .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1999, 55 :938-940