Protein Hydration Dynamics and Molecular Mechanism of Coupled Water-Protein Fluctuations

被引:176
作者
Zhang, Luyuan
Yang, Yi
Kao, Ya-Ting
Wang, Lijuan
Zhong, Dongping [1 ]
机构
[1] Ohio State Univ, Dept Phys, Program Biophys, Columbus, OH 43210 USA
基金
美国国家科学基金会;
关键词
SPERM-WHALE MYOGLOBIN; POLAR SOLVATION DYNAMICS; TRYPTOPHAN FLUORESCENCE; FEMTOSECOND DYNAMICS; STRUCTURAL-CHARACTERIZATION; ELECTRON-TRANSFER; BIOLOGICAL WATER; ENERGY-TRANSFER; LIGAND-BINDING; HYDROGEN-BOND;
D O I
10.1021/ja902918p
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Protein surface hydration is fundamental to its structural stability and flexibility, and water-protein fluctuations are essential to biological function. Here, we report a systematic global mapping of water motions in the hydration layer around a model protein of apomyoglobin in both native and molten globule states. With site-directed mutagenesis, we use intrinsic tryptophan as a local optical probe to scan the protein surface one at a time with single-site specificity. With femtosecond resolution, we examined 16 mutants in two states and observed two types of water-network relaxation with distinct energy and time distributions. The first water motion results from the local collective hydrogen-bond network relaxation and occurs in a few picoseconds. The initial hindered motions, observed in bulk water in femtoseconds, are highly suppressed and drastically slow down due to structured water-network collectivity in the layer. The second water-network relaxation unambiguously results from the lateral cooperative rearrangements in the inner hydration shell and occurs in tens to hundreds of picoseconds. Significantly, this longtime dynamics is the coupled interfacial water-protein motions and is the direct measurement of such cooperative fluctuations. These local protein motions, although highly constrained, are necessary to assist the longtime water-network relaxation. A series of correlations of hydrating water dynamics and coupled fluctuations with local protein's chemical and structural properties were observed. These results are significant and reveal various water behaviors in the hydration layer with wide heterogeneity. We defined a solvation speed and an angular speed to quantify the water-network rigidity and local protein flexibility, respectively. We also observed that the dynamic hydration layer extends to more than 10 angstrom. Finally, from native to molten globule states, the hydration water networks loosen up, and the protein locally becomes more flexible with larger global plasticity and partial unfolding.
引用
收藏
页码:10677 / 10691
页数:15
相关论文
共 117 条
[51]   Ultrafast hydration dynamics in the lipidic cubic phase: Discrete water structures in nanochannels [J].
Kim, Jongjoo ;
Lu, Wenyun ;
Qiu, Weihong ;
Wang, Lijuan ;
Caffrey, Martin ;
Zhong, Dongping .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (43) :21994-22000
[52]   Real-time detection of protein-water dynamics upon protein folding by terahertz absorption spectroscopy [J].
Kim, Seting Joong ;
Born, Benjamin ;
Havenith, Martina ;
Gruebele, Martin .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2008, 47 (34) :6486-6489
[53]   Structural characterization of the molten globule state of apomyoglobin by limited proteolysis and HPLC-mass spectrometry [J].
Kim, YJ ;
Kim, YA ;
Park, N ;
Son, HS ;
Kim, KS ;
Hahn, JH .
BIOCHEMISTRY, 2005, 44 (20) :7490-7496
[54]   Dehydration of main-chain amides in the final folding step of single-chain monellin revealed by time-resolved infrared spectroscopy [J].
Kimura, Tetsunari ;
Maeda, Akio ;
Nishiguchi, Shingo ;
Ishimori, Koichiro ;
Morishima, Isao ;
Konno, Takashi ;
Goto, Yuji ;
Takahashi, Satoshi .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (36) :13391-13396
[55]  
Lakowicz J.R., 2006, PRINCIPLES FLUORESCE, V3rd, DOI DOI 10.1007/978-0-387-46312-4
[56]   Conformational properties of native sperm whale apomyoglobin in solution [J].
Lecomte, JTJ ;
Sukits, SF ;
Bhattacharya, S ;
Falzone, CJ .
PROTEIN SCIENCE, 1999, 8 (07) :1484-1491
[57]   Water mediation in protein folding and molecular recognition [J].
Levy, Yaakov ;
Onuchic, Jose N. .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2006, 35 :389-415
[58]   Hydration dynamics and time scales of coupled water-protein fluctuations [J].
Li, Tanping ;
Hassanali, Ali A. ;
Kao, Ya-Ting ;
Zhong, Dongping ;
Singer, Sherwin J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (11) :3376-3382
[59]   Origin of Slow Relaxation Following Photoexcitation of W7 in Myoglobin and the Dynamics of Its Hydration Layer [J].
Li, Tanping ;
Hassanali, Ali A. ;
Singer, Sherwin J. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (50) :16121-16134
[60]   The nature of aqueous tunneling pathways between electron-transfer proteins [J].
Lin, JP ;
Balabin, IA ;
Beratan, DN .
SCIENCE, 2005, 310 (5752) :1311-1313