Doming modes and dynamics of model heme compounds

被引:39
作者
Klug, DD
Zgierski, MZ
Tse, JS
Liu, ZX
Kincaid, JR
Czarnecki, K
Hemley, RJ
机构
[1] Carnegie Inst Washington, Geophys Lab, Washington, DC 20015 USA
[2] Natl Res Council Canada, Inst Mol Sci, Ottawa, ON K1A 0R6, Canada
[3] Marquette Univ, Dept Chem, Milwaukee, WI 53233 USA
关键词
D O I
10.1073/pnas.152464699
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Synchrotron far-IR spectroscopy and density-functional calculations are used to characterize the low-frequency dynamics of model heme FeCO compounds. The "doming" vibrational mode in which the iron atom moves out of the porphyrin plane while the periphery of this ring moves in the opposite direction determines the reactivity of oxygen with this type of molecule in biological systems. Calculations of frequencies and absorption intensities and the measured pressure dependence of vibrational modes in the model compounds are used to identify the doming and related normal modes.
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收藏
页码:12526 / 12530
页数:5
相关论文
共 26 条
[1]   OPTICAL FLUORESCENCE SYSTEM FOR QUANTITATIVE PRESSURE MEASUREMENT IN DIAMOND-ANVIL CELL [J].
BARNETT, JD ;
BLOCK, S ;
PIERMARINI, GJ .
REVIEW OF SCIENTIFIC INSTRUMENTS, 1973, 44 (01) :1-9
[2]   ENHANCED SAMPLING IN MOLECULAR-DYNAMICS - USE OF THE TIME-DEPENDENT HARTREE APPROXIMATION FOR A SIMULATION OF CARBON-MONOXIDE DIFFUSION THROUGH MYOGLOBIN [J].
ELBER, R ;
KARPLUS, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (25) :9161-9175
[3]   THE CRYSTAL-STRUCTURE OF HUMAN DEOXYHEMOGLOBIN AT 1.74A RESOLUTION [J].
FERMI, G ;
PERUTZ, MF ;
SHAANAN, B ;
FOURME, R .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 175 (02) :159-174
[4]   EVIDENCE FOR SUBPICOSECOND HEME DOMING IN HEMOGLOBIN AND MYOGLOBIN - A TIME-RESOLVED RESONANCE RAMAN COMPARISON OF CARBONMONOXY AND DEOXY SPECIES [J].
FRANZEN, S ;
BOHN, B ;
POYART, C ;
MARTIN, JL .
BIOCHEMISTRY, 1995, 34 (04) :1224-1237
[5]  
Frisch M.J., 1998, GAUSSIAN 98
[6]  
FUHROP JH, 1976, LAB METHODS PROPHYRI, P757
[7]   Determination of the phonon spectrum of iron in myoglobin using inelastic X-ray scattering of synchrotron radiation [J].
Keppler, C ;
Achterhold, K ;
Ostermann, A ;
vanBurck, U ;
Potzel, W ;
Chumakov, AI ;
Baron, AQR ;
Ruffer, R ;
Parak, F .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1997, 25 (03) :221-224
[8]   DFT study of structure and vibrations in low-lying spin states of five-coordinated deoxyheme model [J].
Kozlowski, PM ;
Spiro, TG ;
Zgierski, MZ .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (45) :10659-10666
[9]   Low-lying spin states of iron(II) porphine [J].
Kozlowski, PM ;
Spiro, TG ;
Bérces, A ;
Zgierski, MZ .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (14) :2603-2608
[10]   DFT-SQM force field for nickel porphine: Intrinsic ruffling [J].
Kozlowski, PM ;
Rush, TS ;
Jarzecki, AA ;
Zgierski, MZ ;
Chase, B ;
Piffat, C ;
Ye, BH ;
Li, XY ;
Pulay, P ;
Spiro, TG .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (10) :1357-1366