PGC7 suppresses TET3 for protecting DNA methylation

被引:53
作者
Bian, Chunjing [1 ]
Yu, Xiaochun [1 ]
机构
[1] Univ Michigan, Dept Internal Med, Div Mol Med & Genet, Sch Med, Ann Arbor, MI 48109 USA
关键词
GENE-EXPRESSION; 5-HYDROXYMETHYLCYTOSINE; 5-METHYLCYTOSINE; PROTEINS; GENOME; DEMETHYLATION; DIOXYGENASE; MECHANISMS; CONVERSION; DYNAMICS;
D O I
10.1093/nar/gkt1261
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ten-eleven translocation (TET) family enzymes convert 5-methylcytosine to 5-hydroxylmethylcytosine. However, the molecular mechanism that regulates this biological process is not clear. Here, we show the evidence that PGC7 (also known as Dppa3 or Stella) interacts with TET2 and TET3 both in vitro and in vivo to suppress the enzymatic activity of TET2 and TET3. Moreover, lacking PGC7 induces the loss of DNA methylation at imprinting loci. Genome-wide analysis of PGC7 reveals a consensus DNA motif that is recognized by PGC7. The CpG islands surrounding the PGC7-binding motifs are hypermethylated. Taken together, our study demonstrates a molecular mechanism by which PGC7 protects DNA methylation from TET family enzyme-dependent oxidation.
引用
收藏
页码:2893 / 2905
页数:13
相关论文
共 45 条
[31]   Characterization of PvuRts1I endonuclease as a tool to investigate genomic 5-hydroxymethylcytosine [J].
Szwagierczak, Aleksandra ;
Brachmann, Andreas ;
Schmidt, Christine S. ;
Bultmann, Sebastian ;
Leonhardt, Heinrich ;
Spada, Fabio .
NUCLEIC ACIDS RESEARCH, 2011, 39 (12) :5149-5156
[32]   Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1 [J].
Tahiliani, Mamta ;
Koh, Kian Peng ;
Shen, Yinghua ;
Pastor, William A. ;
Bandukwala, Hozefa ;
Brudno, Yevgeny ;
Agarwal, Suneet ;
Iyer, Lakshminarayan M. ;
Liu, David R. ;
Aravind, L. ;
Rao, Anjana .
SCIENCE, 2009, 324 (5929) :930-935
[33]   Major and essential role for the DNA methylation mark in mouse embryogenesis and stable association of DNMT1 with newly replicated regions [J].
Takebayashi, Shin-ichiro ;
Tamura, Takashi ;
Matsuoka, Chisa ;
Okano, Masaki .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (23) :8243-8258
[34]   Tet family proteins and 5-hydroxymethylcytosine in development and disease [J].
Tan, Li ;
Shi, Yujiang Geno .
DEVELOPMENT, 2012, 139 (11) :1895-1902
[35]   Tet Proteins Connect the O-Linked N-acetylglucosamine Transferase Ogt to Chromatin in Embryonic Stem Cells [J].
Vella, Pietro ;
Scelfo, Andrea ;
Jammula, SriGanesh ;
Chiacchiera, Fulvio ;
Williams, Kristine ;
Cuomo, Alessandro ;
Roberto, Alessandra ;
Christensen, Jesper ;
Bonaldi, Tiziana ;
Helin, Kristian ;
Pasini, Diego .
MOLECULAR CELL, 2013, 49 (04) :645-656
[36]   TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity [J].
Williams, Kristine ;
Christensen, Jesper ;
Pedersen, Marianne Terndrup ;
Johansen, Jens V. ;
Cloos, Paul A. C. ;
Rappsilber, Juri ;
Helin, Kristian .
NATURE, 2011, 473 (7347) :343-U472
[37]   5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming [J].
Wossidlo, Mark ;
Nakamura, Toshinobu ;
Lepikhov, Konstantin ;
Marques, C. Joana ;
Zakhartchenko, Valeri ;
Boiani, Michele ;
Arand, Julia ;
Nakano, Toru ;
Reik, Wolf ;
Walter, Joern .
NATURE COMMUNICATIONS, 2011, 2
[38]   Early Embryos Reprogram DNA Methylation in Two Steps [J].
Wu, Hao ;
Zhang, Yi .
CELL STEM CELL, 2012, 10 (05) :487-489
[39]   Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation [J].
Wu, Hao ;
Zhang, Yi .
GENES & DEVELOPMENT, 2011, 25 (23) :2436-2452
[40]   Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells [J].
Wu, Hao ;
D'Alessio, Ana C. ;
Ito, Shinsuke ;
Xia, Kai ;
Wang, Zhibin ;
Cui, Kairong ;
Zhao, Keji ;
Sun, Yi Eve ;
Zhang, Yi .
NATURE, 2011, 473 (7347) :389-U578