Multiscale methods in drug design bridge chemical and biological complexity in the search for cures

被引:113
作者
Amaro, Rommie E. [1 ]
Mulholland, Adrian J. [2 ]
机构
[1] Univ Calif San Diego, Dept Chem & Biochem, La Jolla, CA 92093 USA
[2] Univ Bristol, Sch Chem, Ctr Computat Chem, Bristol, Avon, England
基金
英国生物技术与生命科学研究理事会; 英国工程与自然科学研究理事会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PROTEIN-FOLDING KINETICS; MEMBRANE-PERMEABILITY; CRYOELECTRON MICROSCOPY; QM/MM SIMULATIONS; RESIDENCE-TIME; FREE-ENERGIES; MODELS; DISCOVERY; BINDING;
D O I
10.1038/s41570-018-0148
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Drug action is inherently multiscale: it connects molecular interactions to emergent properties at cellular and larger scales. Simulation techniques at each of these different scales are already central to drug design and development, but methods capable of connecting across these scales will extend our understanding of complex mechanisms and our ability to predict biological effects. Improved algorithms, ever-more-powerful computing architectures and the accelerating growth of rich data sets are driving advances in multiscale modelling methods capable of bridging chemical and biological complexity from the atom to the cell. Particularly exciting is the development of highly detailed, structure-based physical simulations of biochemical systems, which can now reach experimentally relevant timescales for large systems and, at the same time, achieve unprecedented accuracy. In this Perspective, we discuss how emerging data-rich, physics-based multiscale approaches are on the cusp of realizing their long-promised impact on the discovery, design and development of novel therapeutics. We highlight emerging methods and applications in this growing field and outline how different scales can be combined in practical modelling and simulation strategies.
引用
收藏
页数:12
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