Biological function made crystal clear - annotation of hypothetical proteins via structural genomics

被引:81
作者
Eisenstein, E
Gilliland, GL
Herzberg, O
Moult, J
Orban, J
Poljak, RJ
Banerjei, L
Richardson, D
Howard, AJ
机构
[1] Univ Maryland, Ctr Adv Res Biotechnol, Inst Biotechnol, Natl Inst Stand & Technol, Rockville, MD 20850 USA
[2] Inst Genom Res, Rockville, MD 20850 USA
[3] IIT, Ctr Synchrot Radiat Res & Indtrumentat, Biol Chem & Phys Sci Dept, Chicago, IL 60616 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S0958-1669(99)00063-4
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Many of the gene products of completely sequenced organisms are 'hypothetical' - they cannot be related to any previously characterized proteins - and so are of completely unknown function. Structural studies provide one means of obtaining functional information in these cases. A 'structural genomics' project has been initiated aimed at determining the structures of 50 hypothetical proteins from Haemophilus influenzae to gain an understanding of their function. Each stage of the project - target selection, protein production, crystallization, structure determination, and structure analysis makes use of recent advances to streamline procedures. Early results from this and similar projects are encouraging in that some level of functional understanding can be deduced from experimentally solved structures.
引用
收藏
页码:25 / 30
页数:6
相关论文
共 57 条
  • [31] A combined algorithm for genome-wide prediction of protein function
    Marcotte, EM
    Pellegrini, M
    Thompson, MJ
    Yeates, TO
    Eisenberg, D
    [J]. NATURE, 1999, 402 (6757) : 83 - 86
  • [32] McPherson A., 1999, CRYSTALLIZATION BIOL
  • [33] Automated analysis of NMR assignments and structures for proteins
    Moseley, HNB
    Montelione, GT
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 1999, 9 (05) : 635 - 642
  • [34] Automated combined assignment of NOESY spectra and three-dimensional protein structure determination
    Mumenthaler, C
    Güntert, P
    Braun, W
    Wüthrich, K
    [J]. JOURNAL OF BIOMOLECULAR NMR, 1997, 10 (04) : 351 - 362
  • [35] MURZIN AG, 1995, J MOL BIOL, V247, P536, DOI 10.1016/S0022-2836(05)80134-2
  • [36] Automated NOESY interpretation with ambiguous distance restraints: The refined NMR solution structure of the pleckstrin homology domain from beta-spectrin
    Nilges, M
    Macias, MJ
    ODonoghue, SI
    Oschkinat, H
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 269 (03) : 408 - 422
  • [37] Correlated mutations contain information about protein-protein interaction
    Pazos, F
    HelmerCitterich, M
    Ausiello, G
    Valencia, A
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 271 (04) : 511 - 523
  • [38] IMPROVED TOOLS FOR BIOLOGICAL SEQUENCE COMPARISON
    PEARSON, WR
    LIPMAN, DJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (08) : 2444 - 2448
  • [39] Automated protein model building combined with iterative structure refinement
    Perrakis, A
    Morris, R
    Lamzin, VS
    [J]. NATURE STRUCTURAL BIOLOGY, 1999, 6 (05) : 458 - 463
  • [40] Genome scanning in Haemophilus influenzae for identification of essential genes
    Reich, KA
    Chovan, L
    Hessler, P
    [J]. JOURNAL OF BACTERIOLOGY, 1999, 181 (16) : 4961 - 4968