Protein backbone 1HN-13Cα and 15N-13Cα residual dipolar and J couplings:: New constraints for NMR structure determination

被引:44
作者
Ding, KY [1 ]
Gronenborn, AM [1 ]
机构
[1] NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1021/ja049049l
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A simple, sensitivity-enhanced experiment was devised for accurate measurement of backbone 15N-13Cα and 1HN-13Cα couplings in proteins. The measured residual dipolar couplings 2DHCA, 1DNCA, 3DHCA, and 2DNCA for protein GB1 display very good agreement with the refined NMR structure (PDB code: 3GB1. A Karplus-type relationship between the one-bond 1JNCA couplings and the backbone dihedral ψ angles holds, and on the basis of the two-bond 2JNCA couplings a secondary structure index can be established. Copyright © 2003 American Chemical Society.
引用
收藏
页码:6232 / 6233
页数:2
相关论文
共 19 条
[1]   Application of HN(C)N to rapid estimation of 1J(N-Cα) coupling constants correlated to ψ torsion angles in proteins:: implication to structural genomics [J].
Bhavesh, NS ;
Chatterjee, A ;
Panchal, SC ;
Hosur, RV .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2003, 311 (03) :678-684
[2]   SENSITIVITY IMPROVEMENT IN PROTON-DETECTED 2-DIMENSIONAL HETERONUCLEAR RELAY SPECTROSCOPY [J].
CAVANAGH, J ;
PALMER, AG ;
WRIGHT, PE ;
RANCE, M .
JOURNAL OF MAGNETIC RESONANCE, 1991, 91 (02) :429-436
[3]   NMR dipolar couplings for the structure determination of biopolymers in solution [J].
de Alba, E ;
Tjandra, N .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2002, 40 (02) :175-197
[4]  
DELAGLIO F, 1991, Journal of Biomolecular NMR, V1, P439, DOI 10.1007/BF02192865
[5]   Sensitivity-enhanced IPAP experiments for measuring one-bond 13C′-13Cα and 13Cα-1Hα residual dipolar couplings in proteins [J].
Ding, K ;
Gronenborn, AM .
JOURNAL OF MAGNETIC RESONANCE, 2004, 167 (02) :253-258
[6]   Sensitivity-enhanced E.COSY-type HSQC experiments for accurate measurements of one-bond 15N-1HN and 15N-13C′ and two-bond 13C′-1HN residual dipolar couplings in proteins [J].
Ding, KY ;
Gronenborn, AM .
JOURNAL OF MAGNETIC RESONANCE, 2002, 158 (1-2) :173-177
[7]   A NOVEL, HIGHLY STABLE FOLD OF THE IMMUNOGLOBULIN BINDING DOMAIN OF STREPTOCOCCAL PROTEIN-G [J].
GRONENBORN, AM ;
FILPULA, DR ;
ESSIG, NZ ;
ACHARI, A ;
WHITLOW, M ;
WINGFIELD, PT ;
CLORE, GM .
SCIENCE, 1991, 253 (5020) :657-661
[8]   Methods for the measurement of 1JNCα and 2JNCα from a simplified 2D 13Cα-coupled 15N SE-HSQC spectrum [J].
Heikkinen, S ;
Permi, P ;
Kilpeläinen, I .
JOURNAL OF MAGNETIC RESONANCE, 2001, 148 (01) :53-60
[9]   Improving the packing and accuracy of NMR structures with a pseudopotential for the radius of gyration [J].
Kuszewski, J ;
Gronenborn, AM ;
Clore, GM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (10) :2337-2338
[10]   SYSTEMATIC APPLICATION OF HIGH-RESOLUTION, PHASE-SENSITIVE TWO-DIMENSIONAL H-1-NMR TECHNIQUES FOR THE IDENTIFICATION OF THE AMINO-ACID-PROTON SPIN SYSTEMS IN PROTEINS - RABBIT METALLOTHIONEIN-2 [J].
NEUHAUS, D ;
WAGNER, G ;
VASAK, M ;
KAGI, JHR ;
WUTHRICH, K .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1985, 151 (02) :257-273