Musters, NeuroScope, NDManager:: A free software suite for neurophysiological data processing and visualization

被引：358

作者：

Hazan, Lynn ^{[1
]}

Zugaro, Michael ^{[1
]}

Buzsaki, Gyoergy ^{[1
]}

机构：

[1] Rutgers State Univ, Ctr Mol & Behav Neurosci, Newark, NJ 07102 USA

来源：

JOURNAL OF NEUROSCIENCE METHODS | 2006年 / 155卷 / 02期

关键词：

spike sorting; cluster cutting; data mining; unit activity; local field potentials;

D O I：

10.1016/j.jneumeth.2006.01.017

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Recent technological advances now allow for simultaneous recording of large populations of anatomically distributed neurons in behaving animals. The free software package described here was designed to help neurophysiologists process and view recorded data in an efficient and user-friendly manner. This package consists of several well-integrated applications, including NeuroScope (http://neuroseope.sourceforge.net), an advanced viewer for electrophysiological and behavioral data with limited editing capabilities, Musters (http://klusters.sourceforge.net), a graphical cluster cutting application for manual and semi-automatic spike sorting, NDManager (http://ndmanager.sourceforge.net), an experimental parameter and data processing manager. All of these programs are distributed under the GNU General Public License (GPL, see http://www.gnu.org/licenses/gpl.html), which gives its users legal permission to copy, distribute and/or modify the software. Also included are extensive user manuals and sample data, as well as source code and documentation. (c) 2006 Elsevier B.V. All rights reserved.

引用

页码：207 / 216

页数：10

共 20 条

[1] MULTI-SPIKE TRAIN ANALYSIS [J].

ABELES, M ;

GOLDSTEIN, MH .

PROCEEDINGS OF THE IEEE, 1977, 65 (05) :762-773

[2] Characterization of neocortical principal cells and Interneurons by network interactions and extracellular features [J].

Barthó, P ;

Hirase, H ;

Monconduit, L ;

Zugaro, M ;

Harris, KD ;

Buzsáki, G .

JOURNAL OF NEUROPHYSIOLOGY, 2004, 92 (01) :600-608

[3] Large-scale recording of neuronal ensembles [J].

Buzsáki, G .

NATURE NEUROSCIENCE, 2004, 7 (05) :446-451

[4] HIGH-FREQUENCY NETWORK OSCILLATION IN THE HIPPOCAMPUS [J].

BUZSAKI, G ;

HORVATH, Z ;

URIOSTE, R ;

HETKE, J ;

WISE, K .

SCIENCE, 1992, 256 (5059) :1025-1027

[5] A CLASSIFICATION EM ALGORITHM FOR CLUSTERING AND 2 STOCHASTIC VERSIONS [J].

CELEUX, G ;

GOVAERT, G .

COMPUTATIONAL STATISTICS & DATA ANALYSIS, 1992, 14 (03) :315-332

[6] Massively parallel recording of unit and local field potentials with silicon-based electrodes [J].

Csicsvari, J ;

Henze, DA ;

Jamieson, B ;

Harris, KD ;

Sirota, A ;

Barthó, P ;

Wise, KD ;

Buzsáki, G .

JOURNAL OF NEUROPHYSIOLOGY, 2003, 90 (02) :1314-1323

[7] Reliability and state dependence of pyramidal cell-interneuron synapses in the hippocampus:: an ensemble approach in the behaving rat [J].

Csicsvari, J ;

Hirase, H ;

Czurko, A ;

Buzsáki, G .

NEURON, 1998, 21 (01) :179-189

[8]

EICHENBAUM HB, 2001, NEURONAL ENSEMBLES S

[9] Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability [J].

Fee, MS ;

Mitra, PP ;

Kleinfeld, D .

JOURNAL OF NEUROSCIENCE METHODS, 1996, 69 (02) :175-188

[10] Distribution of spatial and nonspatial information in dorsal hippocampus [J].

Hampson, RE ;

Simeral, JD ;

Deadwyler, SA .

NATURE, 1999, 402 (6762) :610-614

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