A validating CIF parser:: PyCIFRW

被引:30
作者
Hester, J. R. [1 ]
机构
[1] Australian Nucl Sci & Technol Org, ASRP, Menai, NSW 2234, Australia
来源
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 2006年 / 39卷
关键词
D O I
10.1107/S0021889806015627
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
PyCIFRW is a general-purpose Python package providing a simple, powerful interface for working with CIF files. Objects and methods are available for reading, writing and manipulating CIF files and dictionaries. Comprehensive validation of CIF files and dictionaries against DDL1 or DDL2 dictionaries is also possible. PyCIFRW is easily included in larger projects and is portable across a large number of platforms. Although written in an interpreted language, parsing and validation times are acceptable for most applications.
引用
收藏
页码:621 / 625
页数:5
相关论文
共 17 条
[1]  
Bluhm W, 2000, STAR CIF PARSER
[2]   CIF applications. IX. A new approach for representing and manipulating STAR files [J].
Chang, W ;
Bourne, PE .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1998, 31 :505-509
[3]  
EDGINGTON PR, 1997, HICCUP HIGH INTEGRIT
[4]   The Computational Crystallography Toolbox:: crystallographic algorithms in a reusable software framework [J].
Grosse-Kunstleve, RW ;
Sauter, NK ;
Moriarty, NW ;
Adams, PD .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2002, 35 :126-136
[5]  
Hall S.R., 2006, INT TABLES CRYSTALLO, DOI 10.1107/97809553602060000107
[6]   THE CRYSTALLOGRAPHIC INFORMATION FILE (CIF) - A NEW STANDARD ARCHIVE FILE FOR CRYSTALLOGRAPHY [J].
HALL, SR ;
ALLEN, FH ;
BROWN, ID .
ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :655-685
[7]   CIF applications .5. CIFtbx2: Extended tool box for manipulating CIFs [J].
Hall, SR ;
Bernstein, HJ .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1996, 29 (pt 5) :598-603
[8]   Structure of PEP carboxykinase from the succinate-producing Actinobacillus succinogenes:: a new conserved active-site motif [J].
Leduc, YA ;
Prasad, L ;
Laivenieks, M ;
Zeikus, JG ;
Delbaere, LTJ .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2005, 61 :903-912
[9]  
MCMAHON B, 2005, INT TABLES CRYSTALLO, VG, P88
[10]   (1SR,2RS,5RS,6SR,8RS)-7,7-dimethyl- tricyclo[6.2.1.01,6]undecane-2,5,6-triol:: a supramolecular framework built from O-H ••• O hydrogen bonds [J].
Mondal, S ;
Mukherjee, M ;
Roy, A ;
Mukherjee, D ;
Helliwell, M .
ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 2002, 58 :o474-o476