Protein side-chain dynamics observed by solution- and solid-state NMR:: Comparative analysis of methyl 2H relaxation data

被引:50
作者
Reif, Bernd
Xue, Yi
Agarwal, Vipin
Pavlova, Maria S.
Hologne, Maggy
Diehl, Anne
Ryabov, Yaroslav E.
Skrynnikov, Nikolai R.
机构
[1] Forsch Inst Mol Pharmakol, D-13125 Berlin, Germany
[2] Purdue Univ, Dept Chem, W Lafayette, IN 47907 USA
关键词
D O I
10.1021/ja062808a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Rapid advances in solid-state MAS NMR made it possible to probe protein dynamics on a per-residue basis, similar to solution experiments. In this work we compare methyl 2H relaxation rates measured in the solid and liquid samples of α-spectrin SH3 domain. The solution data are treated using a model-free approach to separate the contributions from the overall molecular tumbling and fast internal motion. The latter part forms the basis for comparison with the solid-state data. Although the accuracy of solid-state measurements is limited by deuterium spin diffusion, the results suggest a significant similarity between methyl dynamics in the two samples. This is a potentially important observation, preparing the ground for combined analysis of the dynamics data by solid- and solution-state NMR. Copyright © 2006 American Chemical Society.
引用
收藏
页码:12354 / 12355
页数:2
相关论文
共 31 条
[1]   SPIN DIFFUSION AND SPIN-LATTICE RELAXATION OF DEUTERIUM IN ROTATING SOLIDS [J].
ALLA, M ;
ECKMAN, R ;
PINES, A .
CHEMICAL PHYSICS LETTERS, 1980, 71 (01) :148-151
[2]   What contributions to protein side-chain dynamics are probed by NMR experiments? A molecular dynamics simulation analysis [J].
Best, RB ;
Clarke, J ;
Karplus, M .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 349 (01) :185-203
[3]   Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings [J].
Bouvignies, G ;
Bernadó, P ;
Meier, S ;
Cho, K ;
Grzesiek, S ;
Brüschweiler, R ;
Blackledge, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (39) :13885-13890
[4]   Correlation times and adiabatic barriers for methyl rotation in SNase [J].
Chatfield, DC ;
Augsten, A ;
D'Cunha, C .
JOURNAL OF BIOMOLECULAR NMR, 2004, 29 (03) :377-385
[5]   Molecular dynamics of staphylococcal nuclease:: Comparison of simulation with 15N and 13C NMR relaxation data [J].
Chatfield, DC ;
Szabo, A ;
Brooks, BR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (21) :5301-5311
[6]   Detection of dynamic water molecules in a microcrystalline sample of the SH3 domain of a-spectrin by MAS solid-state NMR [J].
Chevelkov, V ;
Faelber, K ;
Diehl, A ;
Heinemann, U ;
Oschkinat, H ;
Reif, B .
JOURNAL OF BIOMOLECULAR NMR, 2005, 31 (04) :295-310
[7]   BACKBONE DYNAMICS OF A FREE AND A PHOSPHOPEPTIDE-COMPLEXED SRC HOMOLOGY-2 DOMAIN STUDIED BY N-15 NMR RELAXATION [J].
FARROW, NA ;
MUHANDIRAM, R ;
SINGER, AU ;
PASCAL, SM ;
KAY, CM ;
GISH, G ;
SHOELSON, SE ;
PAWSON, T ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1994, 33 (19) :5984-6003
[8]  
Gan ZH, 1998, MOL PHYS, V95, P1143, DOI 10.1080/00268979809483246
[9]   Site-specific backbone dynamics from a crystalline protein by solid-state NMR spectroscopy [J].
Giraud, N ;
Böckmann, A ;
Lesage, A ;
Penin, F ;
Blackledge, M ;
Emsley, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (37) :11422-11423
[10]  
Hoatson G.L., 1994, NMR-BASIC PRINC PROG, V32, P1