Geometry and symmetry presculpt the free-energy landscape of proteins

被引:176
作者
Hoang, TX
Trovato, A
Seno, F
Banavar, JR
Maritan, A
机构
[1] Univ Padua, Italian Natl Inst Mat Phys, I-35131 Padua, Italy
[2] Univ Padua, Dipartimento Fis G Galilei, I-35131 Padua, Italy
[3] Natl Ctr Nat Sci & Technol, Inst Phys, Hanoi, Vietnam
[4] Penn State Univ, Dept Phys, Davey Lab 104, University Pk, PA 16802 USA
[5] Abdus Salam Int Ctr Theoret Phys, I-34014 Trieste, Italy
关键词
D O I
10.1073/pnas.0402525101
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We present a simple physical model that demonstrates that the native-state folds of proteins can emerge on the basis of considerations of geometry and symmetry. We show that the inherent anisotropy of a chain molecule, the geometrical and energetic constraints placed by the hydrogen bonds and sterics, and hydrophobicity are sufficient to yield a free-energy landscape with broad minima even for a homopolymer. These minima correspond to marginally compact structures comprising the menu of folds that proteins choose from to house their native states in. Our results provide a general framework for understanding the common characteristics of globular proteins.
引用
收藏
页码:7960 / 7964
页数:5
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