PERFORMANCE LIQUID-CHROMATOGRAPHY;
HYDROPHILIC INTERACTION CHROMATOGRAPHY;
MULTIVARIATE STATISTICAL-ANALYSIS;
INSULIN-RESISTANT MICE;
FARNESOID-X-RECEPTOR;
SYSTEMS BIOLOGY;
H-1-NMR SPECTROSCOPY;
ACID-METABOLISM;
RAT URINE;
BILE-ACID;
D O I:
10.1039/b820224a
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
070307 [化学生物学];
071010 [生物化学与分子生物学];
摘要:
Liver cirrhosis and hepatocellular carcinoma (HCC) are fatal sequelaes of chronic hepatitis B in China. The sera from HCC and cirrhosis were profiled by rapid resolution liquid chromatography coupled with quadrupole time-of-flight (Q-TOF) mass spectrometry. Reversed-phased (RP) liquid chromatography and hydrophilic interaction chromatography (HILIC) were used for the data acquisition. The normalized and combined data were handled by chemometric analysis, and the combination proved to be effective and reliable for the orthogonal projection to latent structures (OPLS) analysis. Metabonomic profiles and the potential biomarkers were found based on the OPLS models. Shared and unique structure (SUS) plots were used for the evaluation of the potential biomarkers. Glycocholic acid, glycochenodeoxycholic acid, taurocholic acid and taurochenodesoxycholic acid were found to be potential biomarkers related to liver cirrhosis, while dihydrosphingosine and phytosphingosine were potential diagnostic biomarkers of HCC. The other identified metabolites were considered as common potential biomarkers for the two liver diseases. Correlation networks based on these metabolites were also built for the systemic understanding of these diseases and the possible biological implications are discussed. This metabonomic approach may provide insight into discovery and identification of new diagnostic biomarkers for liver cancer and associated diseases.
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Ferrara, Christine T.
;
Wang, Ping
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Wang, Ping
;
Neto, Elias Chaibub
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Neto, Elias Chaibub
;
论文数: 引用数:
h-index:
机构:
Stevens, Robert D.
;
Bain, James R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Bain, James R.
;
Wenner, Brett R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Wenner, Brett R.
;
Ilkayeva, Olga R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Ilkayeva, Olga R.
;
Keller, Mark P.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Keller, Mark P.
;
Blasiole, Daniel A.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Blasiole, Daniel A.
;
Kendziorski, Christina
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Biostat & Med Informat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Kendziorski, Christina
;
Yandell, Brian S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USA
Univ Wisconsin, Dept Hort, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Yandell, Brian S.
;
论文数: 引用数:
h-index:
机构:
Newgard, Christopher B.
;
Attie, Alan D.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Ferrara, Christine T.
;
Wang, Ping
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Wang, Ping
;
Neto, Elias Chaibub
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Neto, Elias Chaibub
;
论文数: 引用数:
h-index:
机构:
Stevens, Robert D.
;
Bain, James R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Bain, James R.
;
Wenner, Brett R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Wenner, Brett R.
;
Ilkayeva, Olga R.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Ilkayeva, Olga R.
;
Keller, Mark P.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Keller, Mark P.
;
Blasiole, Daniel A.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USA
Univ Wisconsin, Dept Biochem, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Blasiole, Daniel A.
;
Kendziorski, Christina
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Biostat & Med Informat, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Kendziorski, Christina
;
Yandell, Brian S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Stat, Madison, WI USA
Univ Wisconsin, Dept Hort, Madison, WI USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA
Yandell, Brian S.
;
论文数: 引用数:
h-index:
机构:
Newgard, Christopher B.
;
Attie, Alan D.
论文数: 0引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Pharmacol & Canc Biol, Durham, NC USADuke Univ, Med Ctr, Sarah W Stedman Nutr & Metab Ctr, Durham, NC 27706 USA