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Introduction to bioinformatics
被引:146
作者
:
Akalin, Pinar Kondu
论文数:
0
引用数:
0
h-index:
0
机构:
Iontek, TR-34010 Istanbul, Turkey
Iontek, TR-34010 Istanbul, Turkey
Akalin, Pinar Kondu
[
1
]
机构
:
[1]
Iontek, TR-34010 Istanbul, Turkey
来源
:
MOLECULAR NUTRITION & FOOD RESEARCH
|
2006年
/ 50卷
/ 07期
关键词
:
bioinformatics;
databases;
genome;
protein;
proteome;
D O I
:
10.1002/mnfr.200500273
中图分类号
:
TS2 [食品工业];
学科分类号
:
0832
[食品科学与工程]
;
摘要
:
This article introduces the field of bioinformatics and describes bioinformatic approaches and their application to the study of protein allergens. The predominant bioinformatics tools and resources are listed and discussed.
引用
收藏
页码:610 / 619
页数:10
相关论文
共 22 条
[11]
Nothing in Biology Makes Sense Except in the Light of Evolution
[J].
Dobzhansky, Theodosius
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0
引用数:
0
h-index:
0
机构:
Rockefeller Univ, New York, NY 10021 USA
Univ Calif Davis, Davis, CA 95616 USA
Rockefeller Univ, New York, NY 10021 USA
Dobzhansky, Theodosius
.
AMERICAN BIOLOGY TEACHER,
2013,
75
(02)
:87
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[12]
Finding genes in DNA with a Hidden Markov Model
[J].
Henderson, J
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0
引用数:
0
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0
机构:
JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Henderson, J
;
Salzberg, S
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0
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0
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0
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JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Salzberg, S
;
Fasman, KH
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0
引用数:
0
h-index:
0
机构:
JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Fasman, KH
.
JOURNAL OF COMPUTATIONAL BIOLOGY,
1997,
4
(02)
:127
-141
[13]
Annotating the human proteome:: the Human Proteome Survey Database (HumanPSD™) and an in-depth target database for G protein-coupled receptors (GPCR-PD™) from Incyte Genomics
[J].
Hodges, PE
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Hodges, PE
;
Carrico, PM
论文数:
0
引用数:
0
h-index:
0
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Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Carrico, PM
;
Hogan, JD
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0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Hogan, JD
;
O'Neill, KE
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0
h-index:
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Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
O'Neill, KE
;
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引用数:
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Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Owen, JJ
;
Mangan, M
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0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Mangan, M
;
Davis, BP
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0
引用数:
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h-index:
0
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Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Davis, BP
;
Brooks, JE
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0
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0
h-index:
0
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Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Brooks, JE
;
Garrels, JI
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0
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0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Garrels, JI
.
NUCLEIC ACIDS RESEARCH,
2002,
30
(01)
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[14]
SDAP: database and computational tools for allergenic proteins
[J].
Ivanciuc, O
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Ivanciuc, O
;
Schein, CH
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Schein, CH
;
Braun, W
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Braun, W
.
NUCLEIC ACIDS RESEARCH,
2003,
31
(01)
:359
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[15]
Predicting allergenic proteins using wavelet transform
[J].
Li, KB
论文数:
0
引用数:
0
h-index:
0
机构:
Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Li, KB
;
Issac, P
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0
引用数:
0
h-index:
0
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Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Issac, P
;
Krishnan, A
论文数:
0
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0
h-index:
0
机构:
Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Krishnan, A
.
BIOINFORMATICS,
2004,
20
(16)
:2572
-2578
[16]
Early bioinformatics: the birth of a discipline - a personal view
[J].
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Ouzounis, CA
;
Valencia, A
论文数:
0
引用数:
0
h-index:
0
机构:
EMBL, European Bioinformat Inst, Computat Genom Grp, Cambridge Outstn, Cambridge CB10 1SD, England
Valencia, A
.
BIOINFORMATICS,
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(17)
:2176
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[17]
REESE M, 1997, RECOMB 97, P232
[18]
IDENTIFICATION OF CODING REGIONS IN GENOMIC DNA-SEQUENCES - AN APPLICATION OF DYNAMIC-PROGRAMMING AND NEURAL NETWORKS
[J].
SNYDER, EE
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder
SNYDER, EE
;
STORMO, GD
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder
STORMO, GD
.
NUCLEIC ACIDS RESEARCH,
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[19]
PREDICTING INTERNAL EXONS BY OLIGONUCLEOTIDE COMPOSITION AND DISCRIMINANT-ANALYSIS OF SPLICEABLE OPEN READING FRAMES
[J].
SOLOVYEV, VV
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0
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0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
SOLOVYEV, VV
;
SALAMOV, AA
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
SALAMOV, AA
;
LAWRENCE, CB
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
LAWRENCE, CB
.
NUCLEIC ACIDS RESEARCH,
1994,
22
(24)
:5156
-5163
[20]
The EMBL Nucleotide Sequence Database
[J].
Stoesser, G
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Stoesser, G
;
Baker, W
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Baker, W
;
论文数:
引用数:
h-index:
机构:
van den Broek, A
;
Camon, E
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Camon, E
;
Garcia-Pastor, M
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Garcia-Pastor, M
;
Kanz, C
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Kanz, C
;
Kulikova, T
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Kulikova, T
;
论文数:
引用数:
h-index:
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Leinonen, R
;
Lin, Q
论文数:
0
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0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lin, Q
;
Lombard, V
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lombard, V
;
Lopez, R
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lopez, R
;
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Redaschi, N
;
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Stoehr, P
;
Tuli, MA
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0
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0
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0
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European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Tuli, MA
;
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h-index:
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Tzouvara, K
;
Vaughan, R
论文数:
0
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h-index:
0
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European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Vaughan, R
.
NUCLEIC ACIDS RESEARCH,
2002,
30
(01)
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←
1
2
3
→
共 22 条
[11]
Nothing in Biology Makes Sense Except in the Light of Evolution
[J].
Dobzhansky, Theodosius
论文数:
0
引用数:
0
h-index:
0
机构:
Rockefeller Univ, New York, NY 10021 USA
Univ Calif Davis, Davis, CA 95616 USA
Rockefeller Univ, New York, NY 10021 USA
Dobzhansky, Theodosius
.
AMERICAN BIOLOGY TEACHER,
2013,
75
(02)
:87
-91
[12]
Finding genes in DNA with a Hidden Markov Model
[J].
Henderson, J
论文数:
0
引用数:
0
h-index:
0
机构:
JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Henderson, J
;
Salzberg, S
论文数:
0
引用数:
0
h-index:
0
机构:
JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Salzberg, S
;
Fasman, KH
论文数:
0
引用数:
0
h-index:
0
机构:
JOHNS HOPKINS UNIV,DIV BIOMED INFORMAT SCI,BALTIMORE,MD 21218
Fasman, KH
.
JOURNAL OF COMPUTATIONAL BIOLOGY,
1997,
4
(02)
:127
-141
[13]
Annotating the human proteome:: the Human Proteome Survey Database (HumanPSD™) and an in-depth target database for G protein-coupled receptors (GPCR-PD™) from Incyte Genomics
[J].
Hodges, PE
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Hodges, PE
;
Carrico, PM
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Carrico, PM
;
Hogan, JD
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Hogan, JD
;
O'Neill, KE
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
O'Neill, KE
;
Owen, JJ
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Owen, JJ
;
Mangan, M
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Mangan, M
;
Davis, BP
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Davis, BP
;
Brooks, JE
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Brooks, JE
;
Garrels, JI
论文数:
0
引用数:
0
h-index:
0
机构:
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Incyte Genom, Proteome Div, Beverly, MA 01915 USA
Garrels, JI
.
NUCLEIC ACIDS RESEARCH,
2002,
30
(01)
:137
-141
[14]
SDAP: database and computational tools for allergenic proteins
[J].
Ivanciuc, O
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Ivanciuc, O
;
Schein, CH
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Schein, CH
;
Braun, W
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Univ Texas, Med Branch, Sealy Ctr Struct Biol, Dept Human Biol Chem & Genet, Galveston, TX 77555 USA
Braun, W
.
NUCLEIC ACIDS RESEARCH,
2003,
31
(01)
:359
-362
[15]
Predicting allergenic proteins using wavelet transform
[J].
Li, KB
论文数:
0
引用数:
0
h-index:
0
机构:
Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Li, KB
;
Issac, P
论文数:
0
引用数:
0
h-index:
0
机构:
Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Issac, P
;
Krishnan, A
论文数:
0
引用数:
0
h-index:
0
机构:
Bioinformat Inst, Singapore 138671, Singapore
Bioinformat Inst, Singapore 138671, Singapore
Krishnan, A
.
BIOINFORMATICS,
2004,
20
(16)
:2572
-2578
[16]
Early bioinformatics: the birth of a discipline - a personal view
[J].
论文数:
引用数:
h-index:
机构:
Ouzounis, CA
;
Valencia, A
论文数:
0
引用数:
0
h-index:
0
机构:
EMBL, European Bioinformat Inst, Computat Genom Grp, Cambridge Outstn, Cambridge CB10 1SD, England
Valencia, A
.
BIOINFORMATICS,
2003,
19
(17)
:2176
-2190
[17]
REESE M, 1997, RECOMB 97, P232
[18]
IDENTIFICATION OF CODING REGIONS IN GENOMIC DNA-SEQUENCES - AN APPLICATION OF DYNAMIC-PROGRAMMING AND NEURAL NETWORKS
[J].
SNYDER, EE
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder
SNYDER, EE
;
STORMO, GD
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder
STORMO, GD
.
NUCLEIC ACIDS RESEARCH,
1993,
21
(03)
:607
-613
[19]
PREDICTING INTERNAL EXONS BY OLIGONUCLEOTIDE COMPOSITION AND DISCRIMINANT-ANALYSIS OF SPLICEABLE OPEN READING FRAMES
[J].
SOLOVYEV, VV
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
SOLOVYEV, VV
;
SALAMOV, AA
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
SALAMOV, AA
;
LAWRENCE, CB
论文数:
0
引用数:
0
h-index:
0
机构:
Department of Cell Biology, Baylor College of Medicine, Houston, TX 77030, One Baylor Plaza
LAWRENCE, CB
.
NUCLEIC ACIDS RESEARCH,
1994,
22
(24)
:5156
-5163
[20]
The EMBL Nucleotide Sequence Database
[J].
Stoesser, G
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Stoesser, G
;
Baker, W
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Baker, W
;
论文数:
引用数:
h-index:
机构:
van den Broek, A
;
Camon, E
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Camon, E
;
Garcia-Pastor, M
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Garcia-Pastor, M
;
Kanz, C
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Kanz, C
;
Kulikova, T
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Kulikova, T
;
论文数:
引用数:
h-index:
机构:
Leinonen, R
;
Lin, Q
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lin, Q
;
Lombard, V
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lombard, V
;
Lopez, R
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Lopez, R
;
论文数:
引用数:
h-index:
机构:
Redaschi, N
;
论文数:
引用数:
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机构:
Stoehr, P
;
Tuli, MA
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Tuli, MA
;
论文数:
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机构:
Tzouvara, K
;
Vaughan, R
论文数:
0
引用数:
0
h-index:
0
机构:
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
Vaughan, R
.
NUCLEIC ACIDS RESEARCH,
2002,
30
(01)
:21
-26
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