Selection of DNA-Encoded Small Molecule Libraries Against Unmodified and Non-Immobilized Protein Targets

被引:87
作者
Zhao, Peng [5 ]
Chen, Zitian [6 ]
Li, Yizhou [5 ]
Sun, Dawei [5 ]
Gao, Yuan [5 ]
Huang, Yanyi [3 ,4 ]
Li, Xiaoyu [1 ,2 ]
机构
[1] Peking Univ, Coll Chem & Mol Engn, Key Lab Bioorgan Chem & Mol Engn, Beijing 100871, Peoples R China
[2] Peking Univ, Shenzhen Grad Sch, Sch Chem Biol & Biotechnol, Key Lab Chem Genom, Shenzhen 518055, Peoples R China
[3] Peking Univ, Biodynam Opt Imaging Ctr BIOPIC, Beijing 100871, Peoples R China
[4] Peking Univ, Coll Engn, Beijing 100871, Peoples R China
[5] Peking Univ, Coll Chem & Mol Engn, Beijing 100871, Peoples R China
[6] Peking Univ, Coll Engn, Beijing 100871, Peoples R China
关键词
DNA; DNA-encoded library; DNA-templated chemistry; drug discovery; selection; IN-VITRO SELECTION; TERMINAL PROTECTION; BINDING PROTEINS; PEPTIDE LIBRARY; LINKED DNA; DISCOVERY; IDENTIFICATION; ASSAY; PCR; EXONUCLEASE;
D O I
10.1002/anie.201404830
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The selection of DNA-encoded libraries against biological targets has become an important discovery method in chemical biology and drug discovery, but the requirement of modified and immobilized targets remains a significant disadvantage. With a terminal protection strategy and ligand-induced photo-crosslinking, we show that iterated selections of DNA-encoded libraries can be realized with unmodified and non-immobilized protein targets.
引用
收藏
页码:10056 / 10059
页数:4
相关论文
共 51 条
[1]  
[Anonymous], 2007, ANGEW CHEM INT ED, DOI DOI 10.1002/ANGE.200605249
[2]  
Blakskjaer P., 2012, WO patent, Patent No. [2012041633 A1, 2012041633]
[3]   ENCODED COMBINATORIAL CHEMISTRY [J].
BRENNER, S ;
LERNER, RA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5381-5383
[4]   Design and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions [J].
Buller, Fabian ;
Mannocci, Luca ;
Zhang, Yixin ;
Dumelin, Christoph E. ;
Scheuermann, Joerg ;
Neri, Dario .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (22) :5926-5931
[5]   Selection of Carbonic Anhydrase IX Inhibitors from One Million DNA-Encoded Compounds [J].
Buller, Fabian ;
Steiner, Martina ;
Frey, Katharina ;
Mircsof, Dennis ;
Scheuermann, Joerg ;
Kalisch, Markus ;
Buehlmann, Peter ;
Supuran, Claudiu T. ;
Neri, Dario .
ACS CHEMICAL BIOLOGY, 2011, 6 (04) :336-344
[6]   Discovery of TNF Inhibitors from a DNA-Encoded Chemical Library based on Diels-Alder Cycloaddition [J].
Buller, Fabian ;
Zhang, Yixin ;
Scheuermann, Joerg ;
Schaefer, Juliane ;
Buehlmann, Peter ;
Neri, Dario .
CHEMISTRY & BIOLOGY, 2009, 16 (10) :1075-1086
[7]   Real-Time Detection of Transcription Factors Using Target-Converted Helicase-Dependent Amplification Assay with Zero-Background Signal [J].
Cao, Anping ;
Zhang, Chun-yang .
ANALYTICAL CHEMISTRY, 2013, 85 (04) :2543-2547
[8]   Protein Detection Based on Small Molecule-Linked DNA [J].
Cao, Ya ;
Zhu, Sha ;
Yu, Jiacui ;
Zhu, Xuejun ;
Yin, Yongmei ;
Li, Genxi .
ANALYTICAL CHEMISTRY, 2012, 84 (10) :4314-4320
[9]   Selecting chemicals: the emerging utility of DNA-encoded libraries [J].
Clark, Matthew A. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2010, 14 (03) :396-403
[10]   Design, synthesis and selection of DNA-encoded small-molecule libraries [J].
Clark, Matthew A. ;
Acharya, Raksha A. ;
Arico-Muendel, Christopher C. ;
Belyanskaya, Svetlana L. ;
Benjamin, Dennis R. ;
Carlson, Neil R. ;
Centrella, Paolo A. ;
Chiu, Cynthia H. ;
Creaser, Steffen P. ;
Cuozzo, John W. ;
Davie, Christopher P. ;
Ding, Yun ;
Franklin, G. Joseph ;
Franzen, Kurt D. ;
Gefter, Malcolm L. ;
Hale, Steven P. ;
Hansen, Nils J. V. ;
Israel, David I. ;
Jiang, Jinwei ;
Kavarana, Malcolm J. ;
Kelley, Michael S. ;
Kollmann, Christopher S. ;
Li, Fan ;
Lind, Kenneth ;
Mataruse, Sibongile ;
Medeiros, Patricia F. ;
Messer, Jeffrey A. ;
Myers, Paul ;
O'Keefe, Heather ;
Oliff, Matthew C. ;
Rise, Cecil E. ;
Satz, Alexander L. ;
Skinner, Steven R. ;
Svendsen, Jennifer L. ;
Tang, Lujia ;
van Vloten, Kurt ;
Wagner, Richard W. ;
Yao, Gang ;
Zhao, Baoguang ;
Morgan, Barry A. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (09) :647-654