Assessment and modeling of the toxicity of organic chemicals to Chlorella vulgaris:: Development of a novel database

被引:55
作者
Cronin, MTD [1 ]
Netzeva, TI [1 ]
Dearden, JC [1 ]
Edwards, R [1 ]
Worgan, ADP [1 ]
机构
[1] Liverpool John Moores Univ, Sch Pharm & Chem, Liverpool L3 3AF, Merseyside, England
关键词
D O I
10.1021/tx0342518
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
This study reports a database of toxicity values for 91 compounds assessed in a novel, rapid, and economical 15 min algal toxicity test. The toxicity data were measured using the unicellular green alga Chlorella vulgaris in an assay that determined the disappearance of fluorescein diacetate. The chemicals tested covered a wide range of physicochemical properties and mechanisms of action. Quantitative activity-activity relationships with the toxicity of the chemicals to other species (Tetrahymena pyriformis, Vibrio fischeri, and Pimephales promelas) showed strong relationships, although some differences resulting from different protocols were established. Quantitative structure-activity relationships (QSARs) were determined using linear [multiple linear regression (MLR)] and nonlinear [k-nearest neighbors (KNN)] methods. Three descriptors, accounting for hydrophobicity, electrophilicity, and a function of molecular size corrected for the presence of heteroatoms, were found to be important to model toxicity. The predictivity of MLR was compared to KNN using leave-one-out cross-validation and the simulation of an external test set. MLR demonstrated greater stability in validation. The results of this study showed that method selection in QSAR is task-dependent and it is inappropriate to resort to more complicated but less transparent methods, unless there are clear indications (e.g., inability of MLR to deal with the data set) for, the need of such methods.
引用
收藏
页码:545 / 554
页数:10
相关论文
共 39 条
[31]   Selection of data sets for QSARs:: Analyses of Tetrahymena toxicity from aromatic compounds [J].
Schultz, TW ;
Netzeva, TI ;
Cronin, MTD .
SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2003, 14 (01) :59-81
[32]   Tetratox: Tetrahymena pyriformis population growth impairment endpoint - A surrogate for fish lethality [J].
Schultz, TW .
TOXICOLOGY METHODS, 1997, 7 (04) :289-309
[33]   Structure-toxicity relationships for benzenes evaluated with Tetrahymena pyriformis [J].
Schultz, TW .
CHEMICAL RESEARCH IN TOXICOLOGY, 1999, 12 (12) :1262-1267
[34]   Reproducibility of toxicity across mode of toxic action in the Tetrahymena population growth impairment assay [J].
Seward, JR ;
Sinks, GD ;
Schultz, TW .
AQUATIC TOXICOLOGY, 2001, 53 (01) :33-47
[35]   Development and validation of k-nearest-neighbor QSPR models of metabolic stability of drug candidates [J].
Shen, M ;
Xiao, YD ;
Golbraikh, A ;
Gombar, VK ;
Tropsha, A .
JOURNAL OF MEDICINAL CHEMISTRY, 2003, 46 (14) :3013-3020
[36]   Quantitative structure-activity relationship analysis of functionalized amino acid anticonvulsant-agents using k nearest neighbor and simulated annealing PLS methods [J].
Shen, M ;
LeTiran, A ;
Xiao, YD ;
Golbraikh, A ;
Kohn, H ;
Tropsha, A .
JOURNAL OF MEDICINAL CHEMISTRY, 2002, 45 (13) :2811-2823
[37]   Applications of QSARs in toxicology: a US government perspective [J].
Walker, JD .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2003, 622 (1-2) :167-184
[38]   Evaluation of a novel short-term algal toxicity assay by the development of QSARs and inter-species relationships for narcotic chemicals [J].
Worgan, ADP ;
Dearden, JC ;
Edwards, R ;
Netzeva, TI ;
Cronin, MTD .
QSAR & COMBINATORIAL SCIENCE, 2003, 22 (02) :204-209
[39]  
Worth AP, 2004, PREDICTING CHEMICAL TOXICITY AND FATE, P429